Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CSPG4Q6UVK1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AL162741.1-201ENST00000565563 1558 ntBASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 PPIH-202ENST00000372549 327 ntTSL 3 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AC034232.1-201ENST00000506026 1064 ntBASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AL355385.1-201ENST00000606123 409 ntBASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AP005212.1-201ENST00000581547 1997 ntBASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 PMS2P1-201ENST00000431037 1228 ntBASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 BX276092.5-203ENST00000456199 560 ntBASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AC012615.1-201ENST00000565797 1299 ntBASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CSPG4Q6UVK1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 AC079781.3-201ENST00000449110 356 ntBASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 KRT8P11-201ENST00000409686 1436 ntBASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CSPG4Q6UVK1 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CSPG4Q6UVK1 CALM3-211ENST00000598871 561 ntTSL 4 BASIC15.71■□□□□ 0.1
CSPG4Q6UVK1 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
CSPG4Q6UVK1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
CSPG4Q6UVK1 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 AL662844.1-201ENST00000546340 181 ntBASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 AL157384.1-201ENST00000445995 2473 ntBASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CSPG4Q6UVK1 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
CSPG4Q6UVK1 KRT16P4-201ENST00000453883 522 ntBASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms