Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC092865.5-201ENST00000545435 363 ntBASIC20.24■□□□□ 0.83
CHD9Q3L8U1 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CHD9Q3L8U1 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 AC074051.2-201ENST00000565115 352 ntBASIC20.23■□□□□ 0.83
CHD9Q3L8U1 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 AC104417.2-201ENST00000562989 1793 ntBASIC20.23■□□□□ 0.83
CHD9Q3L8U1 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 LINC02084-201ENST00000606069 1096 ntBASIC20.23■□□□□ 0.83
CHD9Q3L8U1 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
CHD9Q3L8U1 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 MIR3917-201ENST00000580971 93 ntBASIC20.22■□□□□ 0.83
CHD9Q3L8U1 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.22■□□□□ 0.83
CHD9Q3L8U1 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 AF238378.1-201ENST00000526806 358 ntBASIC20.22■□□□□ 0.83
CHD9Q3L8U1 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CHD9Q3L8U1 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 FAM220CP-201ENST00000395253 831 ntBASIC20.21■□□□□ 0.83
CHD9Q3L8U1 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.21■□□□□ 0.83
CHD9Q3L8U1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CHD9Q3L8U1 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
CHD9Q3L8U1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
CHD9Q3L8U1 KRT18P67-201ENST00000432816 1264 ntBASIC20.2■□□□□ 0.83
CHD9Q3L8U1 PGAM5P1-201ENST00000518923 814 ntBASIC20.2■□□□□ 0.83
CHD9Q3L8U1 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
CHD9Q3L8U1 TP73-AS1-207ENST00000624167 988 ntBASIC20.2■□□□□ 0.83
CHD9Q3L8U1 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 AC055717.3-201ENST00000622967 595 ntBASIC20.2■□□□□ 0.82
CHD9Q3L8U1 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 BAALC-202ENST00000306391 243 ntTSL 5 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 BAALC-204ENST00000330955 222 ntTSL 5 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.2■□□□□ 0.82
CHD9Q3L8U1 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.2■□□□□ 0.82
CHD9Q3L8U1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CHD9Q3L8U1 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms