Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PTCHD3Q3KNS1 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.64■□□□□ 0.58
PTCHD3Q3KNS1 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
PTCHD3Q3KNS1 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
PTCHD3Q3KNS1 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
PTCHD3Q3KNS1 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 AL353708.3-201ENST00000610272 989 ntBASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 CR392000.1-201ENST00000624770 1228 ntBASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.63■□□□□ 0.57
PTCHD3Q3KNS1 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PTCHD3Q3KNS1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms