Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CDH11P55287 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH11P55287 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH11P55287 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH11P55287 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH11P55287 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH11P55287 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH11P55287 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH11P55287 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH11P55287 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC17.47■□□□□ 0.39
CDH11P55287 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
CDH11P55287 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.47■□□□□ 0.39
CDH11P55287 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CDH11P55287 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CDH11P55287 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
CDH11P55287 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CDH11P55287 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CDH11P55287 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CDH11P55287 AC116351.2-201ENST00000606540 1585 ntBASIC17.46■□□□□ 0.39
CDH11P55287 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 AL390719.1-204ENST00000412397 1219 ntBASIC17.46■□□□□ 0.39
CDH11P55287 POM121L13P-201ENST00000422362 380 ntBASIC17.46■□□□□ 0.39
CDH11P55287 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH11P55287 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.46■□□□□ 0.39
CDH11P55287 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH11P55287 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CDH11P55287 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.46■□□□□ 0.39
CDH11P55287 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CDH11P55287 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CDH11P55287 AC104581.1-202ENST00000635932 2618 ntBASIC17.46■□□□□ 0.39
CDH11P55287 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CDH11P55287 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CDH11P55287 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDH11P55287 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDH11P55287 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CDH11P55287 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH11P55287 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CDH11P55287 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.45■□□□□ 0.38
CDH11P55287 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
CDH11P55287 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CDH11P55287 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CDH11P55287 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH11P55287 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CDH11P55287 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.45■□□□□ 0.38
CDH11P55287 AC233263.1-201ENST00000578059 224 ntBASIC17.45■□□□□ 0.38
CDH11P55287 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
CDH11P55287 AL359736.2-201ENST00000621992 437 ntBASIC17.45■□□□□ 0.38
CDH11P55287 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH11P55287 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CDH11P55287 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.45■□□□□ 0.38
CDH11P55287 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC17.45■□□□□ 0.38
CDH11P55287 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CDH11P55287 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CDH11P55287 BCL2-203ENST00000589955 5011 ntBASIC17.45■□□□□ 0.38
CDH11P55287 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.44■□□□□ 0.38
CDH11P55287 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CDH11P55287 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH11P55287 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CDH11P55287 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH11P55287 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.44■□□□□ 0.38
CDH11P55287 AC026471.1-201ENST00000564629 3026 ntBASIC17.44■□□□□ 0.38
CDH11P55287 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CDH11P55287 AC005082.1-201ENST00000413042 2259 ntBASIC17.44■□□□□ 0.38
CDH11P55287 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CDH11P55287 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CDH11P55287 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.44■□□□□ 0.38
CDH11P55287 AC005829.2-201ENST00000571422 1056 ntBASIC17.44■□□□□ 0.38
CDH11P55287 AC006557.6-201ENST00000623071 864 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms