Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC26.44■■□□□ 1.82
MSH6P52701 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC26.44■■□□□ 1.82
MSH6P52701 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC26.44■■□□□ 1.82
MSH6P52701 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC26.44■■□□□ 1.82
MSH6P52701 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC26.44■■□□□ 1.82
MSH6P52701 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC26.43■■□□□ 1.82
MSH6P52701 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
MSH6P52701 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
MSH6P52701 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
MSH6P52701 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
MSH6P52701 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC26.43■■□□□ 1.82
MSH6P52701 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
MSH6P52701 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
MSH6P52701 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
MSH6P52701 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC26.43■■□□□ 1.82
MSH6P52701 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC26.43■■□□□ 1.82
MSH6P52701 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC26.43■■□□□ 1.82
MSH6P52701 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC26.43■■□□□ 1.82
MSH6P52701 MIR3180-5-201ENST00000583743 153 ntBASIC26.43■■□□□ 1.82
MSH6P52701 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC26.43■■□□□ 1.82
MSH6P52701 Z69720.1-201ENST00000601483 472 ntBASIC26.43■■□□□ 1.82
MSH6P52701 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
MSH6P52701 LITAF-220ENST00000620789 692 ntTSL 5 BASIC26.43■■□□□ 1.82
MSH6P52701 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
MSH6P52701 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
MSH6P52701 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC26.42■■□□□ 1.82
MSH6P52701 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
MSH6P52701 MOK-225ENST00000522867 1883 ntTSL 5 BASIC26.42■■□□□ 1.82
MSH6P52701 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
MSH6P52701 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
MSH6P52701 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC26.42■■□□□ 1.82
MSH6P52701 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC26.42■■□□□ 1.82
MSH6P52701 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC26.42■■□□□ 1.82
MSH6P52701 ANKRD18DP-204ENST00000455355 1975 ntBASIC26.42■■□□□ 1.82
MSH6P52701 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
MSH6P52701 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
MSH6P52701 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
MSH6P52701 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.82
MSH6P52701 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
MSH6P52701 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC26.41■■□□□ 1.82
MSH6P52701 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH6P52701 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC26.41■■□□□ 1.82
MSH6P52701 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC26.41■■□□□ 1.82
MSH6P52701 AF238378.1-201ENST00000526806 358 ntBASIC26.41■■□□□ 1.82
MSH6P52701 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC26.41■■□□□ 1.82
MSH6P52701 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
MSH6P52701 FICD-205ENST00000552758 603 ntTSL 2 BASIC26.41■■□□□ 1.82
MSH6P52701 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC26.41■■□□□ 1.82
MSH6P52701 ABBA01031661.1-201ENST00000634362 1253 ntBASIC26.41■■□□□ 1.82
MSH6P52701 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH6P52701 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH6P52701 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
MSH6P52701 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
MSH6P52701 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC26.4■■□□□ 1.82
MSH6P52701 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 AL023284.2-201ENST00000405850 579 ntBASIC26.4■■□□□ 1.82
MSH6P52701 BX842568.4-201ENST00000421222 227 ntBASIC26.4■■□□□ 1.82
MSH6P52701 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC26.4■■□□□ 1.82
MSH6P52701 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC26.4■■□□□ 1.82
MSH6P52701 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC26.4■■□□□ 1.82
MSH6P52701 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC26.4■■□□□ 1.82
MSH6P52701 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC26.4■■□□□ 1.82
MSH6P52701 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
MSH6P52701 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC26.39■■□□□ 1.82
MSH6P52701 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH6P52701 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH6P52701 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH6P52701 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
MSH6P52701 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH6P52701 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC26.39■■□□□ 1.82
MSH6P52701 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
MSH6P52701 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
MSH6P52701 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC26.39■■□□□ 1.82
MSH6P52701 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
MSH6P52701 POLD2P1-201ENST00000511220 997 ntBASIC26.39■■□□□ 1.82
MSH6P52701 MOK-208ENST00000519058 917 ntTSL 2 BASIC26.39■■□□□ 1.82
MSH6P52701 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC26.39■■□□□ 1.82
MSH6P52701 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
MSH6P52701 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC26.39■■□□□ 1.81
MSH6P52701 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
MSH6P52701 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
MSH6P52701 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH6P52701 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
MSH6P52701 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
MSH6P52701 IGHV3-47-201ENST00000425060 335 ntBASIC26.38■■□□□ 1.81
MSH6P52701 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC26.38■■□□□ 1.81
MSH6P52701 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
MSH6P52701 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC26.38■■□□□ 1.81
MSH6P52701 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC26.38■■□□□ 1.81
MSH6P52701 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC26.38■■□□□ 1.81
MSH6P52701 AC112497.1-201ENST00000624824 639 ntBASIC26.38■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms