Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4BO75351 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.69■□□□□ 0.58
VPS4BO75351 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4BO75351 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4BO75351 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS4BO75351 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
VPS4BO75351 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4BO75351 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4BO75351 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VPS4BO75351 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 AL135905.2-201ENST00000584934 1404 ntBASIC18.68■□□□□ 0.58
VPS4BO75351 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS4BO75351 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS4BO75351 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS4BO75351 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS4BO75351 AC079598.2-202ENST00000546624 1451 ntBASIC18.68■□□□□ 0.58
VPS4BO75351 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 AL049812.1-201ENST00000432563 2267 ntBASIC18.68■□□□□ 0.58
VPS4BO75351 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VPS4BO75351 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VPS4BO75351 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC18.68■□□□□ 0.58
VPS4BO75351 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 ANKRD18DP-204ENST00000455355 1975 ntBASIC18.68■□□□□ 0.58
VPS4BO75351 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS4BO75351 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS4BO75351 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS4BO75351 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4BO75351 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VPS4BO75351 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VPS4BO75351 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS4BO75351 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS4BO75351 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS4BO75351 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS4BO75351 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS4BO75351 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS4BO75351 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
VPS4BO75351 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.67■□□□□ 0.58
VPS4BO75351 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS4BO75351 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS4BO75351 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS4BO75351 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS4BO75351 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4BO75351 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
VPS4BO75351 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VPS4BO75351 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4BO75351 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 AC087499.1-201ENST00000418141 1075 ntBASIC18.66■□□□□ 0.58
VPS4BO75351 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.66■□□□□ 0.58
VPS4BO75351 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VPS4BO75351 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS4BO75351 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.66■□□□□ 0.58
VPS4BO75351 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VPS4BO75351 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.66■□□□□ 0.58
VPS4BO75351 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms