Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC24.49■■□□□ 1.51
PTCD1O75127 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC24.49■■□□□ 1.51
PTCD1O75127 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.49■■□□□ 1.51
PTCD1O75127 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 AC036111.1-201ENST00000533973 1582 ntBASIC24.49■■□□□ 1.51
PTCD1O75127 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC24.49■■□□□ 1.51
PTCD1O75127 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
PTCD1O75127 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC24.49■■□□□ 1.51
PTCD1O75127 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC24.48■■□□□ 1.51
PTCD1O75127 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC24.48■■□□□ 1.51
PTCD1O75127 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC24.48■■□□□ 1.51
PTCD1O75127 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC24.48■■□□□ 1.51
PTCD1O75127 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC24.48■■□□□ 1.51
PTCD1O75127 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC24.48■■□□□ 1.51
PTCD1O75127 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC24.48■■□□□ 1.51
PTCD1O75127 IRF5-214ENST00000613821 595 ntTSL 5 BASIC24.48■■□□□ 1.51
PTCD1O75127 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
PTCD1O75127 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
PTCD1O75127 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC24.47■■□□□ 1.51
PTCD1O75127 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC24.47■■□□□ 1.51
PTCD1O75127 MED17-221ENST00000639724 2317 ntTSL 5 BASIC24.47■■□□□ 1.51
PTCD1O75127 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCD1O75127 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC24.47■■□□□ 1.51
PTCD1O75127 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC24.47■■□□□ 1.51
PTCD1O75127 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCD1O75127 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC24.47■■□□□ 1.51
PTCD1O75127 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC24.47■■□□□ 1.51
PTCD1O75127 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
PTCD1O75127 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
PTCD1O75127 LBX2-AS1-202ENST00000603175 2083 ntBASIC24.47■■□□□ 1.51
PTCD1O75127 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
PTCD1O75127 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC24.47■■□□□ 1.51
PTCD1O75127 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC24.47■■□□□ 1.51
PTCD1O75127 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC24.47■■□□□ 1.51
PTCD1O75127 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC24.46■■□□□ 1.51
PTCD1O75127 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC24.46■■□□□ 1.51
PTCD1O75127 AL023284.2-201ENST00000405850 579 ntBASIC24.46■■□□□ 1.51
PTCD1O75127 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC24.46■■□□□ 1.51
PTCD1O75127 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 GOLGA6L5P-202ENST00000515341 1828 ntBASIC24.46■■□□□ 1.51
PTCD1O75127 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
PTCD1O75127 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC24.45■■□□□ 1.51
PTCD1O75127 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC24.45■■□□□ 1.51
PTCD1O75127 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.51
PTCD1O75127 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
PTCD1O75127 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC24.45■■□□□ 1.5
PTCD1O75127 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD1O75127 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD1O75127 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC24.45■■□□□ 1.5
PTCD1O75127 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD1O75127 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD1O75127 AC034232.1-201ENST00000506026 1064 ntBASIC24.45■■□□□ 1.5
PTCD1O75127 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC24.45■■□□□ 1.5
PTCD1O75127 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC24.45■■□□□ 1.5
PTCD1O75127 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC24.45■■□□□ 1.5
PTCD1O75127 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD1O75127 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD1O75127 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD1O75127 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC24.45■■□□□ 1.5
PTCD1O75127 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
PTCD1O75127 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC24.44■■□□□ 1.5
PTCD1O75127 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC24.44■■□□□ 1.5
PTCD1O75127 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC24.44■■□□□ 1.5
PTCD1O75127 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC24.44■■□□□ 1.5
PTCD1O75127 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
PTCD1O75127 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
PTCD1O75127 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
PTCD1O75127 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms