Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM13O60858 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
TRIM13O60858 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM13O60858 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.79■□□□□ 0.6
TRIM13O60858 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
TRIM13O60858 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.79■□□□□ 0.6
TRIM13O60858 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.79■□□□□ 0.6
TRIM13O60858 AC092437.1-201ENST00000624794 1048 ntBASIC18.79■□□□□ 0.6
TRIM13O60858 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM13O60858 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM13O60858 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRIM13O60858 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.79■□□□□ 0.6
TRIM13O60858 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TRIM13O60858 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.79■□□□□ 0.6
TRIM13O60858 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM13O60858 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM13O60858 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.78■□□□□ 0.6
TRIM13O60858 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.78■□□□□ 0.6
TRIM13O60858 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.78■□□□□ 0.6
TRIM13O60858 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 AC083906.6-201ENST00000641366 219 ntBASIC18.78■□□□□ 0.6
TRIM13O60858 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM13O60858 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
TRIM13O60858 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM13O60858 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
TRIM13O60858 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRIM13O60858 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.78■□□□□ 0.6
TRIM13O60858 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
TRIM13O60858 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
TRIM13O60858 ANO7L1-203ENST00000602586 1720 ntBASIC18.77■□□□□ 0.6
TRIM13O60858 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM13O60858 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
TRIM13O60858 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM13O60858 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
TRIM13O60858 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
TRIM13O60858 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.77■□□□□ 0.6
TRIM13O60858 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.77■□□□□ 0.6
TRIM13O60858 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.77■□□□□ 0.6
TRIM13O60858 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM13O60858 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
TRIM13O60858 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.77■□□□□ 0.6
TRIM13O60858 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 AL354751.1-201ENST00000412768 1863 ntBASIC18.77■□□□□ 0.6
TRIM13O60858 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRIM13O60858 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM13O60858 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM13O60858 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM13O60858 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM13O60858 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.77■□□□□ 0.59
TRIM13O60858 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.77■□□□□ 0.59
TRIM13O60858 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM13O60858 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM13O60858 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
TRIM13O60858 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.77■□□□□ 0.59
TRIM13O60858 AC092368.3-202ENST00000574180 1591 ntBASIC18.76■□□□□ 0.59
TRIM13O60858 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM13O60858 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.76■□□□□ 0.59
TRIM13O60858 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
TRIM13O60858 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM13O60858 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.76■□□□□ 0.59
TRIM13O60858 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM13O60858 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.76■□□□□ 0.59
TRIM13O60858 AC018470.1-201ENST00000624790 3129 ntBASIC18.76■□□□□ 0.59
TRIM13O60858 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRIM13O60858 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRIM13O60858 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms