Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RNU4-47P-201ENST00000410876 114 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AL645937.1-202ENST00000421799 937 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AL365496.1-201ENST00000426885 215 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 OR2AS1P-201ENST00000427827 319 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC109925.1-201ENST00000478069 331 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 NDUFB4P2-201ENST00000509515 391 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 SCARNA20.6-201ENST00000517251 106 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC245166.1-201ENST00000521012 253 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 Z99497.2-201ENST00000603634 310 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC004805.2-201ENST00000605382 482 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AL589994.2-201ENST00000621124 579 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.3□□□□□ -1.88
VPS28Q9UK41 AP003399.1-201ENST00000637534 361 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC092435.3-201ENST00000565538 3654 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
VPS28Q9UK41 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
VPS28Q9UK41 MTND5P7-201ENST00000413558 1798 ntBASIC3.3□□□□□ -1.88
VPS28Q9UK41 AC099654.7-201ENST00000635788 2127 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 HSPE1P11-201ENST00000339579 310 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 RNU6-884P-201ENST00000363889 107 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 RNU4-1-201ENST00000363925 141 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 RNU4-91P-201ENST00000364778 135 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 SNORA9-201ENST00000384215 133 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 AL589872.1-201ENST00000426602 288 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 GPM6BP2-201ENST00000432046 144 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 COX6CP2-201ENST00000444980 225 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 GPM6BP1-201ENST00000446387 144 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 Z99127.3-201ENST00000448158 395 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 CECR9-201ENST00000453421 199 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 SNRPGP9-201ENST00000456025 225 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 RPL26P9-201ENST00000457466 433 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 RN7SL863P-201ENST00000462370 296 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 AC114786.4-201ENST00000508771 728 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 RNU1-143P-201ENST00000516296 146 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 RNU7-51P-201ENST00000516560 62 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 AC060788.1-201ENST00000521318 469 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 MTND2P38-201ENST00000522536 667 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 MIR5004-201ENST00000579078 107 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 U1.23-201ENST00000610293 146 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 RNU1-68P-201ENST00000615382 146 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 U1.39-201ENST00000621562 146 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.29□□□□□ -1.88
VPS28Q9UK41 AP003122.5-201ENST00000527668 3766 ntBASIC3.29□□□□□ -1.88
VPS28Q9UK41 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS28Q9UK41 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
VPS28Q9UK41 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
VPS28Q9UK41 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
VPS28Q9UK41 GNG5P1-201ENST00000255500 204 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 FGF7P2-201ENST00000332473 296 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 RNU6-512P-201ENST00000364438 103 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 RNY3P10-201ENST00000384764 102 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 MIR767-201ENST00000390228 109 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 RNA5SP354-201ENST00000391247 136 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 RPL21P3-201ENST00000395517 478 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 HMGN1P14-201ENST00000412459 517 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 SLC44A3-AS1-205ENST00000424505 612 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS28Q9UK41 ISCA1P1-201ENST00000426679 387 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 HMGB3P12-201ENST00000438745 556 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS28Q9UK41 CYCSP32-201ENST00000440548 321 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC093392.2-201ENST00000450682 337 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 RNU6-953P-201ENST00000459154 107 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC146507.2-201ENST00000460608 476 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 MTND1P3-201ENST00000484956 952 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC092185.1-201ENST00000491371 97 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC3.28□□□□□ -1.88
VPS28Q9UK41 MIR2682-201ENST00000580305 110 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AC012493.2-201ENST00000595083 291 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AL590229.1-201ENST00000603497 542 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 AL358072.1-201ENST00000604156 575 ntBASIC3.28□□□□□ -1.88
VPS28Q9UK41 Z94722.1-201ENST00000604328 474 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms