Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RN7SKP186-201ENST00000365371 303 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RPL21P75-201ENST00000396599 483 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RPL21P28-201ENST00000401418 483 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RNA5SP56-201ENST00000410277 118 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AF186996.5-201ENST00000418098 904 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AL590556.1-201ENST00000423231 483 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RPS6P12-201ENST00000432491 726 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 BX679664.1-201ENST00000434429 253 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RPL21P11-201ENST00000461458 483 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RPL21P39-201ENST00000463605 483 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC109925.1-201ENST00000478069 331 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC132942.1-201ENST00000486753 483 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC093591.1-201ENST00000491435 481 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RPL21P16-201ENST00000495531 483 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AKIRIN2P1-201ENST00000505898 352 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 HMGN1P11-201ENST00000508668 303 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 ENPP7P9-201ENST00000514456 627 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RNU6-1095P-201ENST00000516148 108 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 MIR2355-201ENST00000517199 87 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC010186.2-204ENST00000537668 439 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 MIR4643-201ENST00000577473 78 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AL391684.1-202ENST00000641293 1636 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 Y_RNA.358-201ENST00000365491 99 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 MIR190B-201ENST00000401119 79 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 RN7SKP100-201ENST00000411258 284 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AL096701.2-201ENST00000416920 238 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC087650.1-201ENST00000431445 468 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC010326.1-201ENST00000462726 602 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 IGKV1-32-201ENST00000519290 311 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 MIR4277-201ENST00000578298 84 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 RMST_4.1-201ENST00000616886 107 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC097372.5-201ENST00000623665 376 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 HAUS6P2-201ENST00000433254 2404 ntBASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC5.63□□□□□ -1.51
SH3RF1Q7Z6J0 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 STX3-208ENST00000641815 3236 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 AL121839.2-201ENST00000565058 6943 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 SNORD113-8-201ENST00000363497 74 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 RNU6-1020P-201ENST00000363684 107 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 Y_RNA.304-201ENST00000365011 112 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 RFX3-203ENST00000381984 364 ntTSL 3 BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 RNY3P4-201ENST00000384428 101 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 MIR1193-201ENST00000408109 78 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 RPL7AP73-201ENST00000413490 353 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 SSXP9-201ENST00000417503 292 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 AL451062.2-201ENST00000427515 271 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 RPS27AP12-201ENST00000429552 465 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 NUTF2P7-201ENST00000453086 375 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 Y_RNA.662-201ENST00000516028 97 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 RNU6-313P-201ENST00000516317 112 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 RN7SKP21-201ENST00000516503 220 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 RNU6-62P-201ENST00000516526 102 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 AC007458.1-201ENST00000542812 373 ntBASIC5.62□□□□□ -1.51
SH3RF1Q7Z6J0 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97.6 ms