Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC117522.3-201ENST00000507974 584 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AC005921.1-201ENST00000510589 286 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 SNORA31.8-201ENST00000516327 108 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 RN7SKP60-201ENST00000516985 239 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 RANP3-201ENST00000530970 276 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AC006270.2-201ENST00000578523 652 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AC005261.5-201ENST00000596280 355 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-89P-201ENST00000606519 100 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 MAPK10-373ENST00000641983 6772 ntBASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
PTCHD3Q3KNS1 HSPA8P1-201ENST00000425843 1833 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 TPTE2P4-201ENST00000258589 1605 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-845P-201ENST00000362578 103 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 RN7SKP140-201ENST00000411196 284 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AL513331.1-201ENST00000411908 397 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AP002812.1-201ENST00000495378 474 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-507P-201ENST00000516045 100 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 RNA5SP143-201ENST00000516936 115 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AL137161.1-201ENST00000532231 390 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AC078814.3-201ENST00000553036 491 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 MED28P6-201ENST00000558776 231 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AC012409.4-201ENST00000612923 249 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AL359547.2-201ENST00000615810 418 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AC039056.2-201ENST00000622261 511 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 AC112200.1-201ENST00000625015 234 ntBASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
PTCHD3Q3KNS1 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 SNORA31-201ENST00000362607 130 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 RNA5SP124-201ENST00000362739 110 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 Y_RNA.166-201ENST00000363730 102 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 SNORA51.2-201ENST00000364595 132 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 RNA5SP189-201ENST00000364920 115 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 MIR607-201ENST00000385241 96 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-510P-201ENST00000391239 108 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 PTMAP2-201ENST00000397627 327 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 HLFP1-201ENST00000402375 499 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 MIR1290-201ENST00000408735 78 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 AL451054.2-201ENST00000420896 202 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 RPL27AP8-201ENST00000424277 446 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 RPL7L1P10-201ENST00000427790 463 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 GOT2P5-201ENST00000433995 546 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 AC087588.1-201ENST00000462203 316 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 HMGN2P26-201ENST00000463169 339 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 RPL21P8-201ENST00000465083 535 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-927P-201ENST00000516199 100 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-677P-201ENST00000516914 101 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 MTND4P7-201ENST00000523876 130 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 AC005951.2-201ENST00000576282 495 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 AL357559.1-201ENST00000622228 274 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 CR392039.5-201ENST00000623201 510 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 MTND5P42-201ENST00000637720 498 ntBASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
PTCHD3Q3KNS1 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 Y_RNA.100-201ENST00000363141 102 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 Y_RNA.263-201ENST00000364659 114 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RNU4-20P-201ENST00000365601 151 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RNU6-550P-201ENST00000391057 101 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 AL162578.1-201ENST00000406202 378 ntBASIC3.72□□□□□ -1.81
PTCHD3Q3KNS1 RNU4-26P-201ENST00000410270 107 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 202 ms