Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA1P49639 AC100870.1-201ENST00000522035 505 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.04□□□□□ -1.92
HOXA1P49639 AC093012.1-202ENST00000549403 582 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.04□□□□□ -1.92
HOXA1P49639 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA1P49639 MIR4474-201ENST00000579189 78 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC023575.1-201ENST00000580510 358 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 MIR4775-201ENST00000581168 75 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA1P49639 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.04□□□□□ -1.92
HOXA1P49639 BNIP3P30-201ENST00000601184 574 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.04□□□□□ -1.92
HOXA1P49639 FER-210ENST00000628534 558 ntTSL 5 BASIC3.04□□□□□ -1.92
HOXA1P49639 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HOXA1P49639 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.04□□□□□ -1.92
HOXA1P49639 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA1P49639 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA1P49639 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA1P49639 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA1P49639 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA1P49639 RPL7P26-201ENST00000333817 754 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 Y_RNA.88-201ENST00000363029 99 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RNU6-288P-201ENST00000363690 104 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RNU6-996P-201ENST00000365438 107 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RNU6-61P-201ENST00000365528 109 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 RNU6-946P-201ENST00000383878 107 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RNU6-1029P-201ENST00000384109 107 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RNU6-1181P-201ENST00000384191 106 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 Y_RNA.481-201ENST00000384373 102 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 MIR454-201ENST00000390180 115 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.03□□□□□ -1.92
HOXA1P49639 RNU6-876P-201ENST00000391295 104 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA1P49639 AC022028.1-201ENST00000412054 408 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 RPL21P66-201ENST00000426566 466 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 USP12PX-201ENST00000432383 1057 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 H2AFZP6-201ENST00000444403 394 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 NUTF2P3-201ENST00000448540 384 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AC073415.1-201ENST00000449240 153 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 AL118520.1-201ENST00000450770 291 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 AC022364.2-201ENST00000457963 554 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 SNORD97-201ENST00000459187 142 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RPL31P58-201ENST00000469001 379 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 HSPE1P6-201ENST00000479457 291 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 FCF1P3-201ENST00000496394 590 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RAC1P2-201ENST00000511164 579 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RNA5SP164-201ENST00000516533 110 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 RNU6-1178P-201ENST00000516674 107 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 MRPL49P2-201ENST00000521066 465 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 AC022695.1-201ENST00000522089 237 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 SUB1P1-201ENST00000524415 382 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 YPEL5P3-201ENST00000547227 352 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXA1P49639 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.03□□□□□ -1.92
HOXA1P49639 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXA1P49639 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 AC010653.1-201ENST00000571108 881 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AC120057.2-201ENST00000571520 271 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXA1P49639 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HOXA1P49639 MIR5583-1-201ENST00000580941 59 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXA1P49639 RN7SL600P-201ENST00000581811 299 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AC006116.10-201ENST00000591836 581 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 KLKP1-201ENST00000595979 403 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AC010591.1-201ENST00000603941 649 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AC008745.1-201ENST00000604064 271 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA1P49639 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 RDM1-219ENST00000615378 542 ntTSL 3 BASIC3.03□□□□□ -1.92
HOXA1P49639 AC025034.2-201ENST00000623264 286 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 AC005609.4-201ENST00000625071 447 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA1P49639 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA1P49639 AC099654.14-201ENST00000638599 341 ntBASIC3.03□□□□□ -1.92
HOXA1P49639 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.03□□□□□ -1.92
HOXA1P49639 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.03□□□□□ -1.92
HOXA1P49639 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.92
HOXA1P49639 AL354685.2-201ENST00000448218 1447 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
HOXA1P49639 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.02□□□□□ -1.93
HOXA1P49639 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
HOXA1P49639 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HOXA1P49639 RNU6-179P-201ENST00000363350 107 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 RNY3P3-201ENST00000363816 102 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 RNU6-173P-201ENST00000364215 104 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 SNORA70C-201ENST00000384538 135 ntBASIC3.02□□□□□ -1.93
HOXA1P49639 Y_RNA.573-201ENST00000384763 105 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms