Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AC011266.1-201ENST00000624119 3569 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 SDAD1P2-201ENST00000441308 2028 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 RNU6-522P-201ENST00000364497 107 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 RNU6-116P-201ENST00000384042 109 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 SNORA5A-201ENST00000384111 134 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 MT-TD-201ENST00000387419 68 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 RPL21P17-201ENST00000397467 475 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 EIF4EP1-201ENST00000422311 642 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 MTCO3P46-201ENST00000425787 232 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 HMGB1P37-201ENST00000439613 609 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 RPL23AP31-201ENST00000456160 467 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AMD1P1-201ENST00000457220 922 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC007547.1-201ENST00000462177 490 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AL133162.1-201ENST00000463228 453 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AP000873.1-201ENST00000463987 400 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AL049874.1-201ENST00000489560 388 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 MTCO3P9-201ENST00000506989 781 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC112206.3-201ENST00000514578 389 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 RNU6-1038P-201ENST00000516516 104 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.689-201ENST00000516589 107 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 RNU6-677P-201ENST00000516914 101 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 MYL12AP1-201ENST00000518490 515 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC026403.1-201ENST00000518938 295 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 MED28P6-201ENST00000558776 231 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 MIR3944-201ENST00000581277 108 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AL670379.4-201ENST00000605279 254 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AL158032.1-201ENST00000605401 106 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AL355810.1-201ENST00000614629 552 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 AL359697.1-201ENST00000624879 587 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 MTND5P42-201ENST00000637720 498 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
TDP1Q9NUW8 MTND4P35-201ENST00000604257 1375 ntBASIC4.02□□□□□ -1.77
TDP1Q9NUW8 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC068254.2-201ENST00000623938 3577 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 DEFB108F-201ENST00000344638 222 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 RNA5SP119-201ENST00000362715 117 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 Y_RNA.356-201ENST00000365475 113 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 RNU6-817P-201ENST00000391083 104 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AL160275.2-201ENST00000412010 394 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AL451054.2-201ENST00000420896 202 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AL139247.1-201ENST00000422768 325 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 YME1L1P1-201ENST00000429435 297 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 UBE2V1P7-201ENST00000446395 340 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC006499.6-201ENST00000511169 607 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 RNA5SP164-201ENST00000516533 110 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 RNU6-1073P-201ENST00000517182 106 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 RPL7P20-201ENST00000520308 745 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC087241.2-201ENST00000535801 324 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 PSMA3P-201ENST00000555485 635 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC013553.2-201ENST00000604244 589 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AC093913.1-201ENST00000614178 329 ntBASIC4.01□□□□□ -1.77
TDP1Q9NUW8 AL034408.1-202ENST00000636088 415 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 191.3 ms