Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AP001646.1-201ENST00000527936 915 ntBASIC1.51□□□□□ -2.17
HMGB3O15347 AC024224.1-201ENST00000538284 609 ntBASIC1.51□□□□□ -2.17
HMGB3O15347 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC1.51□□□□□ -2.17
HMGB3O15347 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.51□□□□□ -2.17
HMGB3O15347 AC009063.1-201ENST00000563342 702 ntBASIC1.51□□□□□ -2.17
HMGB3O15347 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC1.51□□□□□ -2.17
HMGB3O15347 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC1.51□□□□□ -2.17
HMGB3O15347 BNIP3P24-201ENST00000593398 557 ntBASIC1.51□□□□□ -2.17
HMGB3O15347 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC1.51□□□□□ -2.17
HMGB3O15347 AP001429.1-201ENST00000602568 530 ntBASIC1.51□□□□□ -2.17
HMGB3O15347 AC024581.2-201ENST00000619986 252 ntBASIC1.51□□□□□ -2.17
HMGB3O15347 AC004009.2-201ENST00000623016 728 ntBASIC1.51□□□□□ -2.17
HMGB3O15347 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.5□□□□□ -2.17
HMGB3O15347 MTND5P30-201ENST00000452896 1731 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC1.5□□□□□ -2.17
HMGB3O15347 RNU6-657P-201ENST00000383904 107 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AL356057.1-202ENST00000402263 756 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AL356432.1-201ENST00000405809 419 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
HMGB3O15347 AC019178.2-201ENST00000423595 505 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 BX276092.3-201ENST00000424182 230 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AC092017.2-201ENST00000427600 362 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.5□□□□□ -2.17
HMGB3O15347 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC1.5□□□□□ -2.17
HMGB3O15347 MTND2P5-201ENST00000432656 1006 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC1.5□□□□□ -2.17
HMGB3O15347 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.5□□□□□ -2.17
HMGB3O15347 UBE2D3P1-201ENST00000436669 444 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AL136380.1-201ENST00000447970 162 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 RPL12P25-201ENST00000455592 494 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 ATG12P2-201ENST00000456830 416 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 TRBV1-201ENST00000476502 284 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC1.5□□□□□ -2.17
HMGB3O15347 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC1.5□□□□□ -2.17
HMGB3O15347 RNA5SP291-201ENST00000517222 105 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC1.5□□□□□ -2.17
HMGB3O15347 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC1.5□□□□□ -2.17
HMGB3O15347 AP005639.2-201ENST00000527592 928 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC1.5□□□□□ -2.17
HMGB3O15347 AC106782.4-201ENST00000568264 210 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC1.5□□□□□ -2.17
HMGB3O15347 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC1.5□□□□□ -2.17
HMGB3O15347 AC004853.1-201ENST00000604902 698 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 KATNBL1P1-201ENST00000605192 748 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AC007038.2-201ENST00000608095 740 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 AL356266.1-201ENST00000623311 483 ntBASIC1.5□□□□□ -2.17
HMGB3O15347 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
HMGB3O15347 AC110491.1-201ENST00000562191 2010 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
HMGB3O15347 RNA5SP276-201ENST00000362580 94 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 RNU6-839P-201ENST00000363347 108 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 U3.12-201ENST00000364498 214 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
HMGB3O15347 RPA3-203ENST00000401447 414 ntTSL 3 BASIC1.49□□□□□ -2.17
HMGB3O15347 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
HMGB3O15347 RNU6-955P-201ENST00000410497 104 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
HMGB3O15347 AL161449.1-201ENST00000414531 1199 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.49□□□□□ -2.17
HMGB3O15347 OR4K6P-201ENST00000416478 897 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 BOLA3P4-201ENST00000418151 400 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC1.49□□□□□ -2.17
HMGB3O15347 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC1.49□□□□□ -2.17
HMGB3O15347 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC1.49□□□□□ -2.17
HMGB3O15347 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC1.49□□□□□ -2.17
HMGB3O15347 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC1.49□□□□□ -2.17
HMGB3O15347 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC1.49□□□□□ -2.17
HMGB3O15347 AC096576.1-201ENST00000489014 359 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
HMGB3O15347 AC104090.1-201ENST00000506341 1171 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 HSPE1P18-201ENST00000517602 280 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.49□□□□□ -2.17
HMGB3O15347 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC1.49□□□□□ -2.17
HMGB3O15347 OR5AL2P-201ENST00000532185 920 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
HMGB3O15347 AC026464.5-201ENST00000562497 722 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 LARP7P3-201ENST00000579888 337 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
HMGB3O15347 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.49□□□□□ -2.17
HMGB3O15347 AL121652.1-201ENST00000608851 448 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AC135507.2-201ENST00000612443 309 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AL773524.1-201ENST00000614065 229 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AC013476.2-201ENST00000614456 459 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AL162233.1-201ENST00000620014 944 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 AC007998.5-201ENST00000622938 237 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.49□□□□□ -2.17
HMGB3O15347 AP002791.1-201ENST00000623291 381 ntBASIC1.49□□□□□ -2.17
HMGB3O15347 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC1.49□□□□□ -2.17
HMGB3O15347 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.49□□□□□ -2.17
HMGB3O15347 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.49□□□□□ -2.17
HMGB3O15347 AC131280.1-202ENST00000624067 4211 ntBASIC1.48□□□□□ -2.17
HMGB3O15347 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
HMGB3O15347 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
HMGB3O15347 SNORA5B-201ENST00000363786 132 ntBASIC1.48□□□□□ -2.17
HMGB3O15347 SNORA80A-201ENST00000363922 136 ntBASIC1.48□□□□□ -2.17
HMGB3O15347 SNORA16.1-201ENST00000364597 132 ntBASIC1.48□□□□□ -2.17
HMGB3O15347 SNORA67.3-201ENST00000384366 140 ntBASIC1.48□□□□□ -2.17
HMGB3O15347 MIR23B-201ENST00000384832 97 ntBASIC1.48□□□□□ -2.17
HMGB3O15347 HMGN2P39-201ENST00000398005 273 ntBASIC1.48□□□□□ -2.17
HMGB3O15347 RNU2-28P-201ENST00000410457 189 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms