Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SDC3O75056 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.78□□□□□ -1.96
SDC3O75056 RNU6-223P-201ENST00000362830 107 ntBASIC2.78□□□□□ -1.96
SDC3O75056 RNU6-270P-201ENST00000364131 105 ntBASIC2.78□□□□□ -1.96
SDC3O75056 RNU6-1035P-201ENST00000384477 107 ntBASIC2.78□□□□□ -1.96
SDC3O75056 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
SDC3O75056 AL359704.1-201ENST00000411586 781 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.78□□□□□ -1.96
SDC3O75056 RPL7P10-201ENST00000417407 739 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC019097.1-201ENST00000424783 735 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.78□□□□□ -1.96
SDC3O75056 AC129850.1-201ENST00000436203 508 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SDC3O75056 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC3O75056 AP1S2P1-201ENST00000457344 379 ntBASIC2.78□□□□□ -1.96
SDC3O75056 RN7SL499P-201ENST00000481141 276 ntBASIC2.78□□□□□ -1.96
SDC3O75056 RN7SL633P-201ENST00000488974 297 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC3O75056 AC114781.4-201ENST00000513707 639 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC2.78□□□□□ -1.96
SDC3O75056 RNU6-1282P-201ENST00000516735 96 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC3O75056 AP002748.2-201ENST00000528671 348 ntBASIC2.78□□□□□ -1.96
SDC3O75056 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SDC3O75056 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC3O75056 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC2.78□□□□□ -1.96
SDC3O75056 AL355836.1-201ENST00000555951 870 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC060771.1-201ENST00000582031 164 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.78□□□□□ -1.96
SDC3O75056 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.78□□□□□ -1.96
SDC3O75056 AL627309.6-201ENST00000606857 840 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC069234.5-201ENST00000611056 416 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC093838.1-201ENST00000613014 469 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC013476.2-201ENST00000614456 459 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.78□□□□□ -1.96
SDC3O75056 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SDC3O75056 AC096644.4-201ENST00000563417 2912 ntBASIC2.78□□□□□ -1.96
SDC3O75056 AC006378.2-201ENST00000623178 2476 ntBASIC2.78□□□□□ -1.96
SDC3O75056 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
SDC3O75056 AL049641.1-201ENST00000441055 1948 ntBASIC2.78□□□□□ -1.97
SDC3O75056 AC007785.2-201ENST00000598627 1916 ntBASIC2.78□□□□□ -1.97
SDC3O75056 RNU1-112P-201ENST00000364401 164 ntBASIC2.77□□□□□ -1.97
SDC3O75056 SNORA23-201ENST00000365128 182 ntBASIC2.77□□□□□ -1.97
SDC3O75056 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
SDC3O75056 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
SDC3O75056 SNORD21-201ENST00000383953 95 ntBASIC2.77□□□□□ -1.97
SDC3O75056 RNA5SP354-201ENST00000391247 136 ntBASIC2.77□□□□□ -1.97
SDC3O75056 HMGB1P11-201ENST00000413899 637 ntBASIC2.77□□□□□ -1.97
SDC3O75056 Z85995.1-201ENST00000415547 335 ntBASIC2.77□□□□□ -1.97
SDC3O75056 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.77□□□□□ -1.97
SDC3O75056 HMGN2P30-201ENST00000423237 256 ntBASIC2.77□□□□□ -1.97
SDC3O75056 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC3O75056 DDX3P2-201ENST00000446138 111 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC3O75056 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.77□□□□□ -1.97
SDC3O75056 OR6K1P-201ENST00000456766 971 ntBASIC2.77□□□□□ -1.97
SDC3O75056 ATG12P2-201ENST00000456830 416 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AL135752.1-201ENST00000479477 471 ntBASIC2.77□□□□□ -1.97
SDC3O75056 LINC00888-204ENST00000487386 421 ntBASIC2.77□□□□□ -1.97
SDC3O75056 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SDC3O75056 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC3O75056 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC3O75056 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SDC3O75056 RNU6-1129P-201ENST00000515964 104 ntBASIC2.77□□□□□ -1.97
SDC3O75056 RNU6-678P-201ENST00000516832 109 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC2.77□□□□□ -1.97
SDC3O75056 AC013828.2-201ENST00000532487 235 ntBASIC2.77□□□□□ -1.97
SDC3O75056 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.77□□□□□ -1.97
SDC3O75056 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC3O75056 AC090888.1-201ENST00000561335 1141 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AMZ2P1-203ENST00000565833 850 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AP001004.1-201ENST00000582468 324 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AC008739.2-201ENST00000597006 317 ntBASIC2.77□□□□□ -1.97
SDC3O75056 BNIP3P23-201ENST00000599655 511 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AC063944.3-201ENST00000609969 533 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AC004852.3-201ENST00000614131 326 ntBASIC2.77□□□□□ -1.97
SDC3O75056 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AP002791.1-201ENST00000623291 381 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AP000676.3-201ENST00000623299 569 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.77□□□□□ -1.97
SDC3O75056 AC099063.3-201ENST00000642066 185 ntBASIC2.77□□□□□ -1.97
SDC3O75056 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.77□□□□□ -1.97
SDC3O75056 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
SDC3O75056 AL138713.1-201ENST00000624026 2130 ntBASIC2.77□□□□□ -1.97
SDC3O75056 AC099654.7-201ENST00000635788 2127 ntBASIC2.77□□□□□ -1.97
SDC3O75056 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
SDC3O75056 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
SDC3O75056 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
SDC3O75056 RNY4P24-201ENST00000362735 96 ntBASIC2.76□□□□□ -1.97
SDC3O75056 RNU5A-2P-201ENST00000384337 116 ntBASIC2.76□□□□□ -1.97
SDC3O75056 MIR34A-201ENST00000385130 110 ntBASIC2.76□□□□□ -1.97
SDC3O75056 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
SDC3O75056 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC3O75056 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.76□□□□□ -1.97
SDC3O75056 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC2.76□□□□□ -1.97
SDC3O75056 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.76□□□□□ -1.97
SDC3O75056 RPL32P28-201ENST00000443577 397 ntBASIC2.76□□□□□ -1.97
SDC3O75056 TPT1P14-201ENST00000448018 505 ntBASIC2.76□□□□□ -1.97
SDC3O75056 OR6C5P-201ENST00000452388 923 ntBASIC2.76□□□□□ -1.97
SDC3O75056 RPS20P20-201ENST00000460498 340 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 178.7 ms