Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 SNORA46-201ENST00000384762 135 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC245054.2-201ENST00000415639 319 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 RPL21P2-201ENST00000440049 481 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 SNORD109B-201ENST00000458961 67 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 SNORD109A-201ENST00000459128 67 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AL160314.1-201ENST00000490836 438 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC105252.1-201ENST00000503089 286 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC093809.1-201ENST00000509155 340 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC022634.1-201ENST00000520765 532 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC023538.1-201ENST00000534576 736 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 HSPE1P20-201ENST00000538133 289 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC009097.3-201ENST00000563557 1018 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 UBE2L4-201ENST00000587688 464 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 VN1R82P-201ENST00000601481 356 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC024560.3-201ENST00000608482 349 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC004908.2-201ENST00000609090 574 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AL161734.1-201ENST00000609720 557 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC004696.1-201ENST00000614345 607 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 DLEU1_2.1-201ENST00000617920 342 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AL158801.5-201ENST00000623123 465 ntBASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
HDDC3Q8N4P3 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 ZNF29P-201ENST00000225587 168 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 RNU6-884P-201ENST00000363889 107 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 RNU6-1242P-201ENST00000391052 103 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 RNA5SP492-201ENST00000411330 114 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 BTF3L4P3-201ENST00000418879 476 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC244505.4-201ENST00000434905 287 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 SSXP5-201ENST00000443473 287 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 UQCRHP3-201ENST00000451503 251 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 RPL23AP35-201ENST00000451906 501 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 NIPA2P5-201ENST00000452282 464 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 USP9YP25-201ENST00000457708 443 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 MRPS17P3-201ENST00000465453 385 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC119751.4-201ENST00000507498 357 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC113155.1-201ENST00000511141 769 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 RNA5SP290-201ENST00000517133 127 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 RN7SKP40-201ENST00000517211 242 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 MIR4506-201ENST00000584693 77 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 RPP40P2-201ENST00000603596 712 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC104763.2-201ENST00000604179 382 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AL592221.1-201ENST00000605266 382 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC106052.1-201ENST00000608029 497 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 FTX_3.1-201ENST00000610451 147 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC087241.4-201ENST00000612441 480 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AL136981.2-201ENST00000617319 734 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AP000676.3-201ENST00000623299 569 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC112204.3-201ENST00000623822 332 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC103798.2-201ENST00000624292 632 ntBASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
HDDC3Q8N4P3 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 PABPC1P9-201ENST00000426076 1612 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 RN7SKP266-201ENST00000410232 287 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 RNU2-25P-201ENST00000411041 191 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 AL359704.1-201ENST00000411586 781 ntBASIC2.87□□□□□ -1.95
HDDC3Q8N4P3 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms