Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 AC090971.4-201ENST00000560291 1800 ntBASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 ST7-212ENST00000422922 1887 ntTSL 5 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC5.68□□□□□ -1.5
CHMP3Q9Y3E7 EIF2AP4-201ENST00000424793 1781 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 EMSY-204ENST00000524490 4015 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 UBBP2-201ENST00000376781 231 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 Y_RNA.493-201ENST00000384422 102 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 EIF4A1P11-201ENST00000451239 222 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AL353752.1-201ENST00000454946 260 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 RPS23P7-201ENST00000466210 444 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 RPL22P13-201ENST00000493291 347 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC026801.1-201ENST00000497178 464 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC083829.1-201ENST00000503756 657 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC096745.1-201ENST00000509945 370 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 RNU6-1143P-201ENST00000516125 104 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 HMGN1P28-201ENST00000521340 364 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC022882.1-201ENST00000532142 501 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC007619.2-201ENST00000605743 379 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AL365434.2-201ENST00000607979 234 ntBASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 OR6C2-202ENST00000641202 2105 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 GHR-202ENST00000357703 4316 ntTSL 5 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 GHR-213ENST00000622294 4312 ntTSL 5 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
CHMP3Q9Y3E7 IQCB2P-201ENST00000401788 1633 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 DDX18P3-201ENST00000404856 2007 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AC138393.1-203ENST00000327086 343 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 RNU6-842P-201ENST00000384269 107 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 RPL23AP50-201ENST00000434149 455 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 NOTCH2P1-201ENST00000443481 624 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AC234775.1-201ENST00000454247 670 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 RPL23AP24-201ENST00000458203 385 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AC015795.1-201ENST00000513669 327 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AC091516.1-201ENST00000549191 703 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AL512605.2-201ENST00000592972 256 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AL031176.1-201ENST00000604554 466 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 IGHV3-29-201ENST00000604817 344 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 AP001642.1-201ENST00000624727 2117 ntBASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC5.66□□□□□ -1.5
CHMP3Q9Y3E7 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 Y_RNA.106-201ENST00000363189 100 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC019155.1-201ENST00000382242 574 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 RNU2-23P-201ENST00000410545 195 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 RNU6-55P-201ENST00000411092 107 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 TMSB10P2-201ENST00000416049 131 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AL391219.1-201ENST00000422570 483 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 CYCSP43-201ENST00000438233 310 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC009901.1-201ENST00000506703 541 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC092436.3-201ENST00000511788 257 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 Y_RNA.680-201ENST00000516441 93 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC131281.1-201ENST00000522984 164 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AP006587.4-201ENST00000526053 529 ntBASIC5.65□□□□□ -1.5
CHMP3Q9Y3E7 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms