Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC9.53□□□□□ -0.88
SENP3Q9H4L4 AC107934.2-201ENST00000518653 310 ntBASIC9.53□□□□□ -0.88
SENP3Q9H4L4 AC079905.1-201ENST00000549280 475 ntBASIC9.53□□□□□ -0.88
SENP3Q9H4L4 HIGD1AP1-201ENST00000550979 275 ntBASIC9.53□□□□□ -0.88
SENP3Q9H4L4 MIR4305-201ENST00000583252 102 ntBASIC9.53□□□□□ -0.88
SENP3Q9H4L4 NBPF12-206ENST00000617844 6326 ntAPPRIS P2 TSL 5 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC9.53□□□□□ -0.88
SENP3Q9H4L4 AC024651.2-201ENST00000562480 2098 ntBASIC9.52□□□□□ -0.88
SENP3Q9H4L4 ZNF160-202ENST00000418871 4219 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
SENP3Q9H4L4 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC9.52□□□□□ -0.88
SENP3Q9H4L4 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 SCAND2P-201ENST00000348993 8975 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 SNORA70.3-201ENST00000365075 132 ntBASIC9.52□□□□□ -0.89
SENP3Q9H4L4 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC9.52□□□□□ -0.89
SENP3Q9H4L4 EIF4A1P12-201ENST00000551910 141 ntBASIC9.52□□□□□ -0.89
SENP3Q9H4L4 PTPN2-212ENST00000591497 3390 ntTSL 5 BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 U6.73-201ENST00000619194 103 ntBASIC9.52□□□□□ -0.89
SENP3Q9H4L4 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC9.52□□□□□ -0.89
SENP3Q9H4L4 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 BEST1-202ENST00000449131 4267 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
SENP3Q9H4L4 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 MIPOL1-201ENST00000327441 7185 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 RPL27AP8-201ENST00000424277 446 ntBASIC9.51□□□□□ -0.89
SENP3Q9H4L4 NXT1P1-201ENST00000458481 316 ntBASIC9.51□□□□□ -0.89
SENP3Q9H4L4 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 AC009120.3-201ENST00000563335 499 ntBASIC9.51□□□□□ -0.89
SENP3Q9H4L4 AC020916.2-201ENST00000591242 360 ntBASIC9.51□□□□□ -0.89
SENP3Q9H4L4 Y_RNA.773-201ENST00000607168 90 ntBASIC9.51□□□□□ -0.89
SENP3Q9H4L4 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 AC100757.1-201ENST00000616872 1835 ntBASIC9.51□□□□□ -0.89
SENP3Q9H4L4 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC9.51□□□□□ -0.89
SENP3Q9H4L4 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 OR7G2-202ENST00000641081 3015 ntAPPRIS ALT2 BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 SPIRE1-206ENST00000453447 2107 ntTSL 5 BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 DLEU2_6.3-201ENST00000340052 136 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 RNU1-96P-201ENST00000364163 162 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 SNORD115-27-201ENST00000364430 82 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 RNU6-296P-201ENST00000384608 107 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 AC093729.1-201ENST00000513074 128 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 MIR3135A-201ENST00000578460 77 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 AL034555.1-201ENST00000604816 211 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 DLEU2_6.2-201ENST00000620994 136 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 AC064859.1-201ENST00000624741 174 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 AL049767.1-202ENST00000637826 242 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 AC138915.4-201ENST00000565549 4147 ntBASIC9.5□□□□□ -0.89
SENP3Q9H4L4 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 CNOT4-201ENST00000315544 3783 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
SENP3Q9H4L4 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 AC140479.2-201ENST00000421567 3130 ntBASIC9.49□□□□□ -0.89
SENP3Q9H4L4 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 USP16-203ENST00000399975 2960 ntAPPRIS ALT1 TSL 1 (best) BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 RNA5SP201-201ENST00000410316 124 ntBASIC9.49□□□□□ -0.89
SENP3Q9H4L4 RNU6-693P-201ENST00000516134 107 ntBASIC9.49□□□□□ -0.89
SENP3Q9H4L4 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 MIR3921-201ENST00000577308 85 ntBASIC9.49□□□□□ -0.89
SENP3Q9H4L4 JPX_2.1-201ENST00000614161 69 ntBASIC9.49□□□□□ -0.89
SENP3Q9H4L4 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 PIK3AP1-203ENST00000371110 3151 ntTSL 2 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 PRLR-216ENST00000542609 1764 ntTSL 5 BASIC9.49□□□□□ -0.89
SENP3Q9H4L4 AC010329.2-201ENST00000595195 2737 ntBASIC9.49□□□□□ -0.89
SENP3Q9H4L4 CRB1-210ENST00000538660 3397 ntTSL 2 BASIC9.49□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 137.6 ms