Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AP001273.1-201ENST00000624493 3152 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 MIR1302-3-201ENST00000408128 138 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 RNA5SP239-201ENST00000410218 129 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 RNA5SP31-201ENST00000411144 127 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC108032.1-201ENST00000416706 207 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 BX510359.3-201ENST00000422168 306 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC092423.1-201ENST00000430165 186 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 HMGB1P12-201ENST00000438594 598 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 H2AFZP6-201ENST00000444403 394 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 UBE2CP3-201ENST00000502715 450 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC024940.3-201ENST00000538551 316 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 H3F3AP1-201ENST00000559984 334 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 CYCSP39-201ENST00000565821 309 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC234771.5-201ENST00000600161 514 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AL512329.2-201ENST00000607350 548 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 SDR42E1P1-201ENST00000611327 477 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 MTND5P9-201ENST00000503854 1755 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CCDC140Q96MF4 PCAT14-202ENST00000627127 3935 ntBASIC4.02□□□□□ -1.77
CCDC140Q96MF4 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC109780.1-201ENST00000451768 1344 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 RNU6-884P-201ENST00000363889 107 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 SNORD14.1-201ENST00000365609 90 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 RHOT1P2-201ENST00000366423 333 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 RNU6-217P-201ENST00000384164 104 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 RNU6-72P-201ENST00000384285 79 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 RNA5SP187-201ENST00000384400 119 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AL138885.1-201ENST00000405921 675 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 MIR1286-201ENST00000408112 78 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 MIR1178-201ENST00000408396 91 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 COX5BP7-201ENST00000414780 274 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AL355433.1-201ENST00000422804 300 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 HIGD1AP2-201ENST00000446367 280 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 RPS21P4-201ENST00000487122 248 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC005476.1-201ENST00000554427 397 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 LINC00933-203ENST00000559812 219 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC020895.1-201ENST00000595362 272 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 7SK.7-201ENST00000603504 247 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 U4.7-201ENST00000638126 106 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC112198.2-201ENST00000426589 6996 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC114947.2-201ENST00000565748 2125 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 AC092376.2-201ENST00000622621 4116 ntBASIC4.01□□□□□ -1.77
CCDC140Q96MF4 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC140Q96MF4 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC140Q96MF4 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms