Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXA1P49639 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
HOXA1P49639 AC004520.1-201ENST00000608362 1413 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA1P49639 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA1P49639 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA1P49639 AC090337.1-201ENST00000579651 2074 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA1P49639 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA1P49639 Y_RNA.89-201ENST00000363031 102 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 RNU1-32P-201ENST00000363937 159 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 SNORA62.1-201ENST00000364287 154 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 RNU6-283P-201ENST00000364788 107 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 RNU5E-6P-201ENST00000365574 115 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 RNU6-701P-201ENST00000384059 107 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 RNY3P14-201ENST00000384309 102 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 MIR558-201ENST00000384920 94 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AL031121.1-201ENST00000406553 254 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 RPL5P18-201ENST00000406671 891 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 RPL26P29-201ENST00000415623 438 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 MTATP6P4-201ENST00000427725 675 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AP000907.1-201ENST00000428428 510 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 HMGB1P31-201ENST00000437242 427 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 HMGB3P12-201ENST00000438745 556 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 DPPA3P1-201ENST00000448050 469 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA1P49639 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA1P49639 CACYBPP2-201ENST00000453625 678 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA1P49639 RPS29P15-201ENST00000458329 171 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXA1P49639 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA1P49639 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA1P49639 RNU7-51P-201ENST00000516560 62 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 RN7SKP209-201ENST00000516888 304 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA1P49639 AC011979.2-201ENST00000527568 352 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AP001646.1-201ENST00000527936 915 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC109635.3-201ENST00000529536 185 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 OR4R1P-201ENST00000529879 463 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 OR5B10P-201ENST00000532869 642 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA1P49639 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA1P49639 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA1P49639 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXA1P49639 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 AL606490.9-201ENST00000603331 271 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AP001330.4-201ENST00000604350 154 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AP002360.4-201ENST00000606980 481 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC104458.1-201ENST00000608243 463 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA1P49639 AL589994.2-201ENST00000621124 579 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 AC011944.2-201ENST00000624440 683 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 MIR1321-201ENST00000637766 79 ntBASIC3.1□□□□□ -1.91
HOXA1P49639 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXA1P49639 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HOXA1P49639 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA1P49639 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA1P49639 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA1P49639 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
HOXA1P49639 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
HOXA1P49639 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXA1P49639 AC009812.4-201ENST00000569134 1805 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXA1P49639 AC008264.2-201ENST00000610193 3731 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 RNU6-1120P-201ENST00000362988 108 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 RNU6-1097P-201ENST00000363586 107 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 RNA5SP97-201ENST00000365006 84 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 RNU6-76P-201ENST00000384060 104 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AC110754.1-201ENST00000399740 601 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AL136116.1-201ENST00000403591 381 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AL359634.1-202ENST00000404721 284 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 RNU4-6P-201ENST00000410804 122 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 RNA5SP31-201ENST00000411144 127 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AC245291.1-201ENST00000419501 328 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 TIMM9P3-201ENST00000428659 274 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA1P49639 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXA1P49639 AL158071.1-201ENST00000430315 461 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AC000111.3-201ENST00000433478 193 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 GOT2P5-201ENST00000433995 546 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXA1P49639 SNORA71B-202ENST00000439232 272 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXA1P49639 AC079781.2-201ENST00000446424 169 ntBASIC3.09□□□□□ -1.91
HOXA1P49639 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXA1P49639 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXA1P49639 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms