Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC025518.1-201ENST00000479856 347 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AL160314.1-201ENST00000490836 438 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC11O43248 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXC11O43248 ARL2BPP4-201ENST00000506854 471 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC11O43248 RNU2-27P-201ENST00000516185 142 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 SNORA74D-201ENST00000516404 141 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 Vault.3-201ENST00000516676 95 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 SNORD59.2-201ENST00000516873 68 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC11O43248 ARL2BPP2-201ENST00000550907 489 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXC11O43248 HMGB1P14-201ENST00000557424 591 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 KLKP1-201ENST00000595979 403 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AC090578.1-201ENST00000604955 591 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AC099778.2-201ENST00000610904 211 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 AC048344.4-201ENST00000619744 527 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 U4.6-201ENST00000621618 127 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.61□□□□□ -1.83
HOXC11O43248 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXC11O43248 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXC11O43248 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXC11O43248 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.6□□□□□ -1.83
HOXC11O43248 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXC11O43248 AC022336.2-201ENST00000568966 2538 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 SNORD56.2-201ENST00000363242 71 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC11O43248 SNORA20.2-201ENST00000383922 131 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RNU6-701P-201ENST00000384059 107 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RNU6-297P-201ENST00000384636 107 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 MIR184-201ENST00000384962 84 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
HOXC11O43248 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXC11O43248 HSPE1P8-201ENST00000406997 288 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RNU2-33P-201ENST00000410344 192 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 Z85995.1-201ENST00000415547 335 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC11O43248 AC007283.2-201ENST00000424739 197 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AC005326.1-201ENST00000429197 123 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RPL23AP69-201ENST00000431134 458 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXC11O43248 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC11O43248 MTCO1P19-201ENST00000443487 500 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AC244505.5-201ENST00000443639 207 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 GAPDHP17-201ENST00000449858 1001 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 SNRPGP6-201ENST00000451124 220 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AL122001.1-201ENST00000457027 370 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RPL21P10-201ENST00000463521 490 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RN7SL594P-201ENST00000470590 287 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXC11O43248 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC11O43248 AC010265.1-201ENST00000513509 211 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.6□□□□□ -1.83
HOXC11O43248 AC011602.1-201ENST00000546484 331 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AC011611.1-201ENST00000552179 197 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.6□□□□□ -1.83
HOXC11O43248 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.6□□□□□ -1.83
HOXC11O43248 HMGB1P6-201ENST00000569046 646 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 MIR3200-201ENST00000580767 85 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RSL24D1P11-201ENST00000591045 491 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 HSPE1P7-201ENST00000604681 321 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 RMST_8.1-201ENST00000610287 165 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AC010678.1-201ENST00000614118 713 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AC138932.5-201ENST00000617759 563 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 AC091953.5-201ENST00000622919 233 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXC11O43248 MTND1P37-201ENST00000636562 264 ntBASIC3.6□□□□□ -1.83
HOXC11O43248 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
HOXC11O43248 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HOXC11O43248 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.6□□□□□ -1.83
HOXC11O43248 MAPK10-362ENST00000641864 4484 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC11O43248 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC11O43248 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC11O43248 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC11O43248 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC11O43248 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC11O43248 HSPE1P11-201ENST00000339579 310 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 SNORA48.8-201ENST00000391324 134 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 RPS3AP36-201ENST00000398190 775 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC11O43248 RNU2-36P-201ENST00000410361 191 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC11O43248 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC11O43248 C1DP2-201ENST00000418167 426 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AC012498.1-201ENST00000424037 437 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AC002075.2-201ENST00000425207 252 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC11O43248 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC11O43248 NEFMP1-201ENST00000443423 1006 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.59□□□□□ -1.83
HOXC11O43248 MTCO3P20-201ENST00000454926 688 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AC087588.1-201ENST00000462203 316 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AC093663.1-201ENST00000497190 394 ntBASIC3.59□□□□□ -1.83
HOXC11O43248 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXC11O43248 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
HOXC11O43248 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.59□□□□□ -1.83
HOXC11O43248 RPL21P12-201ENST00000559810 515 ntBASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 92.1 ms