Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LRRC37A5P-203ENST00000580181 585 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 MIR548AC-201ENST00000585049 88 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 MIR376A1-201ENST00000616574 68 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC074101.1-201ENST00000637861 241 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 Z75746.1-201ENST00000440243 2080 ntBASIC4.73□□□□□ -1.65
HIF3AQ9Y2N7 AC026951.1-201ENST00000559530 2459 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AC104623.2-202ENST00000623477 4002 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 HAUS6P2-201ENST00000433254 2404 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-1317P-201ENST00000364582 104 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 MIR105-1-201ENST00000385222 81 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-700P-201ENST00000391043 107 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 SNORD58.1-201ENST00000391313 66 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 U3.35-201ENST00000408405 208 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-607P-201ENST00000411283 108 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 RN7SKP293-201ENST00000411389 296 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 HMGN2P27-201ENST00000427352 270 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AC092573.2-201ENST00000434546 243 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AL391987.1-201ENST00000441025 200 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AL513124.1-201ENST00000450410 614 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 RN7SL273P-201ENST00000481561 299 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-911P-201ENST00000516523 104 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 RNA5SP373-201ENST00000517271 95 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AP002392.1-201ENST00000537692 208 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 FKBP1BP1-201ENST00000553366 325 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AC123912.5-201ENST00000605470 343 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AC138965.3-201ENST00000623875 498 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AC073136.1-201ENST00000449426 2884 ntBASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
HIF3AQ9Y2N7 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
HIF3AQ9Y2N7 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC4.71□□□□□ -1.65
HIF3AQ9Y2N7 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
HIF3AQ9Y2N7 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
HIF3AQ9Y2N7 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AL592437.2-201ENST00000421655 2434 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.458-201ENST00000384240 102 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 Y_RNA.534-201ENST00000384599 112 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 RNU6-1140P-201ENST00000410517 106 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AC009238.2-201ENST00000431026 355 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 CKS1BP5-201ENST00000434172 273 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AC098831.1-201ENST00000440661 216 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 RPS15AP34-201ENST00000487776 387 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 RPS4XP20-201ENST00000505751 772 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AC067942.3-201ENST00000512025 362 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 SERF1AP1-201ENST00000514575 187 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 SCARNA21.2-201ENST00000516600 166 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AC007458.1-201ENST00000542812 373 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 RPL10P14-201ENST00000565265 298 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 HNRNPCP4-201ENST00000571636 900 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AC136932.1-201ENST00000574771 208 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 MIR4643-201ENST00000577473 78 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AC118658.2-201ENST00000618697 459 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 ZNF299P-201ENST00000406845 1804 ntBASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
HIF3AQ9Y2N7 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
HIF3AQ9Y2N7 AL359854.1-201ENST00000614203 1594 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 155.8 ms