Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 GEMIN2P1-201ENST00000454246 752 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 snoU13.29-201ENST00000459370 104 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 BTF3L4P4-201ENST00000506381 449 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 RNU6-772P-201ENST00000516042 105 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 SCARNA18.1-201ENST00000516330 83 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 RNU6-966P-201ENST00000516479 104 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 MIR2117-201ENST00000516780 80 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 AC124916.2-201ENST00000604416 224 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 AL670379.3-201ENST00000605040 251 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 AL360181.4-201ENST00000621752 134 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 AP001642.1-201ENST00000624727 2117 ntBASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
VPS9D1Q9Y2B5 AL353743.1-202ENST00000431724 1695 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 THAP12P5-201ENST00000405864 2275 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 RNU6-915P-201ENST00000364943 103 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 SNORD116-21-201ENST00000384507 92 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 MIR10A-201ENST00000385043 110 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 RNA5SP431-201ENST00000410312 120 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 Y_RNA.595-201ENST00000410403 105 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 SSXP9-201ENST00000417503 292 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 PNKDP1-201ENST00000435914 430 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AC023141.8-201ENST00000442554 208 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AL354710.1-201ENST00000453641 246 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AC087588.1-201ENST00000462203 316 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 RN7SL269P-201ENST00000467795 305 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AC004980.4-201ENST00000513375 203 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 RFPL4AP5-201ENST00000514977 504 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 RNA5SP471-201ENST00000516971 106 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AL358913.1-201ENST00000554342 121 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AC060780.2-201ENST00000589047 198 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 DEFB117-201ENST00000602356 141 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 AL133481.2-203ENST00000607558 139 ntBASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
VPS9D1Q9Y2B5 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 snoU2_19.4-201ENST00000364329 80 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 Y_RNA.319-201ENST00000365138 92 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 RNU6-407P-201ENST00000365280 104 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 EIF5AP4-201ENST00000441206 465 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 AC124916.1-201ENST00000444020 547 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 AC068228.1-201ENST00000461723 211 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 AF186996.7-201ENST00000492781 209 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 SNORD33.1-201ENST00000516213 88 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 AC084851.1-201ENST00000529105 249 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 UBL5P4-201ENST00000562584 236 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 TXNP4-201ENST00000575018 310 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 AL034408.1-202ENST00000636088 415 ntBASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
VPS9D1Q9Y2B5 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms