Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MIR1244-3-201ENST00000635744 85 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 MIR1244-2-201ENST00000636449 85 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 MIR1244-4-202ENST00000636813 85 ntBASIC4.05□□□□□ -1.76
CCDC140Q96MF4 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC140Q96MF4 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 LINC01109-201ENST00000603837 3081 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.153-201ENST00000363615 91 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 RNA5SP90-201ENST00000364801 99 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 YPEL5P1-201ENST00000419731 367 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 VTI1BP4-201ENST00000427516 527 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 U8.20-201ENST00000459445 131 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 COPS8P2-201ENST00000473228 627 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC114801.2-201ENST00000503825 781 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 RNU6-612P-201ENST00000516909 102 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.721-201ENST00000517207 102 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC012400.1-201ENST00000518452 381 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC040958.1-201ENST00000561102 201 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 MIR4489-201ENST00000578869 62 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 SRGNP1-201ENST00000603392 451 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC124312.5-201ENST00000604451 268 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 MIR8076-201ENST00000611401 83 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AL450345.1-202ENST00000605741 3881 ntBASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC140Q96MF4 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 Y_RNA.126-201ENST00000363382 111 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 RN7SKP280-201ENST00000364196 304 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 RNU6-505P-201ENST00000384427 107 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 RNU6-823P-201ENST00000391042 103 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 RPS29P10-201ENST00000439197 166 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 CHEK2P4-201ENST00000450340 246 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 NUTF2P7-201ENST00000453086 375 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 OR2AO1P-201ENST00000476497 403 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 RNU6-1282P-201ENST00000516735 96 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 RNU6-1183P-201ENST00000517054 60 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 AP002404.1-201ENST00000532005 451 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 SALL4P2-201ENST00000423288 2910 ntBASIC4.03□□□□□ -1.76
CCDC140Q96MF4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC140Q96MF4 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.03□□□□□ -1.77
CCDC140Q96MF4 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms