Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL390240.1-201ENST00000612950 384 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 uc_338.34-201ENST00000617467 174 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 CR381572.2-201ENST00000624852 397 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 MIR7153-201ENST00000637758 57 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 AL049641.1-201ENST00000441055 1948 ntBASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CCDC28AQ8IWP9 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.59□□□□□ -1.84
CCDC28AQ8IWP9 CUL1P1-201ENST00000509510 2425 ntBASIC3.59□□□□□ -1.84
CCDC28AQ8IWP9 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RNA5SP307-201ENST00000362863 116 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RN7SKP115-201ENST00000363177 317 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 Y_RNA.157-201ENST00000363638 102 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RFX3-203ENST00000381984 364 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 Y_RNA.390-201ENST00000383932 102 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 MIR301A-201ENST00000385261 86 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RNU6ATAC7P-201ENST00000408111 127 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RN7SKP53-201ENST00000411337 315 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RPL30P16-201ENST00000419341 429 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RPS15AP6-201ENST00000420703 385 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RPL23AP1-201ENST00000428990 471 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 GPM6BP2-201ENST00000432046 144 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RPL36AP53-201ENST00000432891 316 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AL512844.2-201ENST00000433990 593 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 SNORA71B-202ENST00000439232 272 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RPS24P13-201ENST00000442520 397 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 TRAPPC2P3-201ENST00000443200 321 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 GPM6BP1-201ENST00000446387 144 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RPL23AP56-201ENST00000460778 453 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RPL7P19-201ENST00000469948 618 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AC140172.1-201ENST00000502928 141 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 PHBP14-201ENST00000512887 367 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RN7SKP147-201ENST00000517154 244 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 CASP1P1-201ENST00000526345 212 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 MIR4489-201ENST00000578869 62 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 MIR4424-201ENST00000585257 86 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AC093799.2-201ENST00000610062 578 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 MUCL1-205ENST00000619042 243 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 DUXAP9-208ENST00000622815 614 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AL512643.1-201ENST00000635735 524 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 Z99571.1-201ENST00000636677 394 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 CASC19-280ENST00000642102 1351 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AC118273.1-201ENST00000525324 3006 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 CPHL1P-201ENST00000461341 3407 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AF127577.6-201ENST00000623352 2191 ntBASIC3.58□□□□□ -1.84
CCDC28AQ8IWP9 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 MFSD8-236ENST00000641509 4050 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 RNA5SP305-201ENST00000362665 119 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 Y_RNA.231-201ENST00000364358 102 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 RNU4-66P-201ENST00000365199 138 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 MIR514A2-201ENST00000385131 88 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 MIR514A3-201ENST00000385132 88 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 MIR325-201ENST00000385260 98 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 CD3D-202ENST00000392884 476 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 AL592114.1-201ENST00000403842 483 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 FAT1P1-201ENST00000406588 507 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 MTND3P16-201ENST00000452205 344 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 FABP5P15-201ENST00000453566 214 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 AC116533.1-201ENST00000459748 321 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 SNRPGP3-201ENST00000469405 227 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 RN7SL629P-201ENST00000489622 285 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 AC025164.1-201ENST00000496249 478 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 RNU6-1282P-201ENST00000516735 96 ntBASIC3.57□□□□□ -1.84
CCDC28AQ8IWP9 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms