Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR3922-201ENST00000585192 84 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC009570.1-201ENST00000609599 745 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AL161734.1-201ENST00000609720 557 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AP001506.1-201ENST00000615444 211 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 MIR6076-201ENST00000617521 113 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC068137.4-201ENST00000638485 296 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 AC005832.2-201ENST00000538921 1430 ntBASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
PDLIM3Q53GG5 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AL365361.1-201ENST00000566942 3481 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 RNU6-1119P-201ENST00000384349 108 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AL391417.1-201ENST00000404100 426 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AL663109.1-201ENST00000411498 844 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 RPL21P24-201ENST00000413752 448 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AL035423.1-201ENST00000420331 213 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 PPP1R11P2-201ENST00000423543 382 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 BX890604.2-201ENST00000427883 474 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC104850.1-201ENST00000435940 476 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 RPL35AP22-201ENST00000436855 335 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC073614.1-201ENST00000438690 650 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 PGBD4P3-201ENST00000440731 581 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 GAPDHP17-201ENST00000449858 1001 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 MTND2P24-201ENST00000453434 806 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 MTND1P9-201ENST00000453775 944 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 TPT1P7-201ENST00000458300 517 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 RNA5SP310-201ENST00000459084 116 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 RNU7-59P-201ENST00000459101 61 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC091435.1-201ENST00000505442 584 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC109464.2-201ENST00000510242 943 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 RNU6-64P-201ENST00000517119 105 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AGGF1P4-201ENST00000568249 801 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC009812.4-201ENST00000569134 1805 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC005951.1-201ENST00000576706 485 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC006504.3-201ENST00000586818 523 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC080078.1-201ENST00000603643 410 ntTSL 3 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC090578.1-201ENST00000604955 591 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 TUG1_2.1-201ENST00000614234 87 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC008121.2-201ENST00000614647 523 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC009509.4-201ENST00000619202 509 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AL138713.1-201ENST00000624026 2130 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 LRRC77P-213ENST00000637727 880 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 AC093908.1-201ENST00000623125 8092 ntBASIC3.06□□□□□ -1.92
PDLIM3Q53GG5 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 OR1S2-201ENST00000302592 978 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 RNU5E-1-201ENST00000362477 120 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 RNU6-283P-201ENST00000364788 107 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 RNU6-76P-201ENST00000384060 104 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 MTND1P21-201ENST00000412991 285 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 MTCO3P41-201ENST00000414801 328 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 C1DP2-201ENST00000418167 426 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AC008850.1-201ENST00000427546 362 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 DPPA2P1-201ENST00000428060 556 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AL358934.1-201ENST00000432346 324 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 RPS29P31-201ENST00000446147 164 ntBASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.05□□□□□ -1.92
PDLIM3Q53GG5 AC108059.3-201ENST00000456388 214 ntBASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms