Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC091905.4-201ENST00000623432 202 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL8A1P27658 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL8A1P27658 AL359955.1-201ENST00000455242 3275 ntBASIC4.81□□□□□ -1.64
COL8A1P27658 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.81□□□□□ -1.64
COL8A1P27658 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
COL8A1P27658 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 STK3-216ENST00000523601 3107 ntTSL 2 BASIC4.81□□□□□ -1.64
COL8A1P27658 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL8A1P27658 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
COL8A1P27658 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL8A1P27658 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.8□□□□□ -1.64
COL8A1P27658 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC4.8□□□□□ -1.64
COL8A1P27658 BCORP1-203ENST00000513194 5093 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 AC007685.1-201ENST00000329806 452 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 RNU6-288P-201ENST00000363690 104 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 AC068538.1-201ENST00000376856 336 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 MIR551A-201ENST00000385042 96 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 RNU11-201ENST00000387069 134 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.8□□□□□ -1.64
COL8A1P27658 AC068287.1-201ENST00000430283 295 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.8□□□□□ -1.64
COL8A1P27658 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.8□□□□□ -1.64
COL8A1P27658 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.8□□□□□ -1.64
COL8A1P27658 HMGN1P11-201ENST00000508668 303 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.8□□□□□ -1.64
COL8A1P27658 SNORA25.12-201ENST00000516202 82 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 RNU6-390P-201ENST00000516259 103 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 Y_RNA.709-201ENST00000516952 92 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC4.8□□□□□ -1.64
COL8A1P27658 RPL21P9-201ENST00000556149 474 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC4.8□□□□□ -1.64
COL8A1P27658 AL360012.1-201ENST00000602813 131 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 AP000787.2-201ENST00000604432 568 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.8□□□□□ -1.64
COL8A1P27658 AC025574.2-201ENST00000615621 514 ntBASIC4.8□□□□□ -1.64
COL8A1P27658 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.8□□□□□ -1.64
COL8A1P27658 DLD-214ENST00000639772 421 ntTSL 5 BASIC4.8□□□□□ -1.64
COL8A1P27658 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
COL8A1P27658 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
COL8A1P27658 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.8□□□□□ -1.64
COL8A1P27658 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
COL8A1P27658 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC4.8□□□□□ -1.64
COL8A1P27658 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.8□□□□□ -1.64
COL8A1P27658 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL8A1P27658 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.79□□□□□ -1.64
COL8A1P27658 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC4.79□□□□□ -1.64
COL8A1P27658 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC4.79□□□□□ -1.64
COL8A1P27658 RNU6-989P-201ENST00000362756 107 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 Y_RNA.238-201ENST00000364441 102 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 RNU6-729P-201ENST00000384399 107 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 SNORA40.19-201ENST00000390846 128 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 MIR513C-201ENST00000401352 84 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 COX6B1P1-201ENST00000415962 213 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 AL133482.1-201ENST00000415988 498 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 AL390729.2-201ENST00000416137 156 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 AL096701.2-201ENST00000416920 238 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 EBAG9P1-201ENST00000418955 543 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 AL512844.2-201ENST00000433990 593 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 DUTP1-201ENST00000493631 470 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 RNU6-27P-201ENST00000516146 107 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 RNU6-659P-201ENST00000516454 104 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 RNU7-121P-201ENST00000516604 62 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC4.79□□□□□ -1.64
COL8A1P27658 AC090281.1-201ENST00000523019 276 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 SNRPGP16-201ENST00000533275 226 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC4.79□□□□□ -1.64
COL8A1P27658 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.79□□□□□ -1.64
COL8A1P27658 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC4.79□□□□□ -1.64
COL8A1P27658 AC055872.1-201ENST00000570978 278 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 MIR4270-201ENST00000581799 70 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 AC005828.6-201ENST00000606610 232 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 AC092692.1-201ENST00000623625 2595 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 AC116158.1-201ENST00000560231 2129 ntBASIC4.79□□□□□ -1.64
COL8A1P27658 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL8A1P27658 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms