Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.9□□□□□ -2.1
USP54Q70EL1 RNA5SP139-201ENST00000364340 117 ntBASIC1.9□□□□□ -2.1
USP54Q70EL1 FO393413.1-201ENST00000402892 195 ntBASIC1.9□□□□□ -2.1
USP54Q70EL1 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.9□□□□□ -2.1
USP54Q70EL1 MTCO3P17-201ENST00000443775 513 ntBASIC1.9□□□□□ -2.1
USP54Q70EL1 AC104689.1-201ENST00000473356 768 ntBASIC1.9□□□□□ -2.1
USP54Q70EL1 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC1.9□□□□□ -2.1
USP54Q70EL1 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC1.9□□□□□ -2.1
USP54Q70EL1 DUXAP4-201ENST00000603046 613 ntBASIC1.9□□□□□ -2.1
USP54Q70EL1 STMN1P1-201ENST00000617809 440 ntBASIC1.9□□□□□ -2.1
USP54Q70EL1 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC1.9□□□□□ -2.1
USP54Q70EL1 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC1.9□□□□□ -2.1
USP54Q70EL1 AC121333.1-201ENST00000567488 2709 ntBASIC1.9□□□□□ -2.1
USP54Q70EL1 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USP54Q70EL1 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC1.9□□□□□ -2.11
USP54Q70EL1 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.11
USP54Q70EL1 ATP5J2P3-201ENST00000451550 258 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 AL031183.1-201ENST00000457667 207 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.9□□□□□ -2.11
USP54Q70EL1 AC096571.1-202ENST00000506634 735 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 AC006390.1-201ENST00000508068 283 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 AC008562.1-201ENST00000521763 330 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 ERHP1-201ENST00000523006 310 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 OR10V3P-201ENST00000525712 725 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC1.9□□□□□ -2.11
USP54Q70EL1 NBEAP1-201ENST00000554452 979 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 AC135803.1-201ENST00000608748 565 ntBASIC1.9□□□□□ -2.11
USP54Q70EL1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.89□□□□□ -2.11
USP54Q70EL1 RNU6-461P-201ENST00000364195 107 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 SNORA67.1-201ENST00000364749 141 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 SFR1P1-201ENST00000403720 688 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 AL606495.1-201ENST00000422100 813 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
USP54Q70EL1 HMGN1P7-201ENST00000491722 313 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 AC105914.1-201ENST00000511798 226 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 RN7SKP49-201ENST00000516675 260 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 IGKV2D-36-201ENST00000518643 226 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 OR4R1P-201ENST00000529879 463 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 OSBPL9P3-201ENST00000534523 595 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC1.89□□□□□ -2.11
USP54Q70EL1 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC1.89□□□□□ -2.11
USP54Q70EL1 LINC01899-201ENST00000580323 312 ntTSL 5 BASIC1.89□□□□□ -2.11
USP54Q70EL1 AL355812.1-201ENST00000603215 216 ntBASIC1.89□□□□□ -2.11
USP54Q70EL1 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC1.89□□□□□ -2.11
USP54Q70EL1 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.88□□□□□ -2.11
USP54Q70EL1 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.88□□□□□ -2.11
USP54Q70EL1 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.88□□□□□ -2.11
USP54Q70EL1 RNU6-452P-201ENST00000384406 107 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 RNU6-837P-201ENST00000391056 108 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 AC096533.1-201ENST00000411645 353 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 AC233728.2-201ENST00000425348 757 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 ARL5AP3-201ENST00000439327 386 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 MTCYBP34-201ENST00000439552 670 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC1.88□□□□□ -2.11
USP54Q70EL1 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC1.88□□□□□ -2.11
USP54Q70EL1 COX6CP12-201ENST00000446748 202 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 AC004223.1-201ENST00000479840 271 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 RPL23AP41-201ENST00000484754 458 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC1.88□□□□□ -2.11
USP54Q70EL1 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC1.88□□□□□ -2.11
USP54Q70EL1 AC096734.1-201ENST00000511279 1128 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
USP54Q70EL1 CIR1P1-201ENST00000524055 1133 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 SMILR-201ENST00000533992 553 ntTSL 4 BASIC1.88□□□□□ -2.11
USP54Q70EL1 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
USP54Q70EL1 AC106791.2-201ENST00000604680 391 ntBASIC1.88□□□□□ -2.11
USP54Q70EL1 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.88□□□□□ -2.11
USP54Q70EL1 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
USP54Q70EL1 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
USP54Q70EL1 OR5T1-202ENST00000641665 1471 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
USP54Q70EL1 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
USP54Q70EL1 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
USP54Q70EL1 AL030996.1-201ENST00000411430 235 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 AL513185.2-201ENST00000425543 193 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC1.87□□□□□ -2.11
USP54Q70EL1 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.87□□□□□ -2.11
USP54Q70EL1 HSFY3P-201ENST00000444242 1191 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.87□□□□□ -2.11
USP54Q70EL1 AC008526.1-201ENST00000509149 338 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 AC087373.1-201ENST00000524920 491 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.87□□□□□ -2.11
USP54Q70EL1 PSMA3P-201ENST00000555485 635 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC1.87□□□□□ -2.11
USP54Q70EL1 AC117490.2-201ENST00000610042 594 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 AC140725.3-201ENST00000616193 880 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 uc_338.12-201ENST00000616344 181 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.87□□□□□ -2.11
USP54Q70EL1 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.87□□□□□ -2.11
USP54Q70EL1 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.87□□□□□ -2.11
USP54Q70EL1 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
USP54Q70EL1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
USP54Q70EL1 RNU6-386P-201ENST00000362650 107 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 AC092447.6-201ENST00000414578 210 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC1.86□□□□□ -2.11
USP54Q70EL1 snoU13.4-201ENST00000458916 104 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC1.86□□□□□ -2.11
USP54Q70EL1 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC1.86□□□□□ -2.11
USP54Q70EL1 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC1.86□□□□□ -2.11
USP54Q70EL1 RN7SL622P-201ENST00000585292 275 ntBASIC1.86□□□□□ -2.11
USP54Q70EL1 BNIP3P4-201ENST00000604946 565 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms