Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 HSPE1P8-201ENST00000406997 288 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 EIF4EP2-201ENST00000422816 654 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 AL390119.1-201ENST00000440329 312 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 RPL36AP39-201ENST00000445859 318 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 PRDX3P3-201ENST00000447765 522 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 NDUFB4P9-201ENST00000511646 388 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 Y_RNA.713-201ENST00000517013 96 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 AC022884.2-201ENST00000578535 580 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 AL162431.4-201ENST00000604674 411 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 RNA5SP440-201ENST00000612665 119 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 AC005344.1-201ENST00000613391 459 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 AC022467.1-201ENST00000614738 749 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 FP236240.3-201ENST00000623061 327 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 PCAT14-202ENST00000627127 3935 ntBASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
HIF3AQ9Y2N7 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 MIR335-201ENST00000362173 94 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 Y_RNA.16-201ENST00000362421 102 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-1266P-201ENST00000362794 105 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 RNU1-76P-201ENST00000362903 159 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 snoU2_19.2-201ENST00000363024 80 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 HSPA8P15-201ENST00000401676 786 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 RN7SKP286-201ENST00000410894 299 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AL139156.1-201ENST00000412785 841 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AC007098.1-201ENST00000420122 367 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 GAPDHP58-201ENST00000438477 1006 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 RPL29P29-201ENST00000448725 423 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 Y_RNA.644-201ENST00000459006 113 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 ENPP7P11-201ENST00000505915 627 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 Y_RNA.674-201ENST00000516362 113 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AC008694.2-201ENST00000517591 306 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 IGHVII-53-1-201ENST00000519538 255 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AC087369.1-201ENST00000520775 996 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AC087441.2-201ENST00000529141 262 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AC126177.3-201ENST00000551839 688 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 TRAV32-201ENST00000553993 340 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 RPL23AP87-202ENST00000573039 466 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 MIR548AI-201ENST00000579940 88 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 RN7SL708P-201ENST00000580952 299 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 HOTTIP_3.1-201ENST00000619957 337 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AL691477.1-201ENST00000624398 162 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 MIR4302-201ENST00000638058 60 ntBASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HIF3AQ9Y2N7 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 NEAT1-202ENST00000501122 22743 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL034549.2-201ENST00000618285 3373 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RNA5SP335-201ENST00000363817 110 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RN7SKP124-201ENST00000364730 341 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 BPHL-201ENST00000380368 797 ntTSL 5 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RNU6-837P-201ENST00000391056 108 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL513475.1-201ENST00000406602 315 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 EIF4A1P3-201ENST00000411521 244 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RPS11P7-201ENST00000442125 465 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 RPL7P49-201ENST00000471402 708 ntBASIC4.75□□□□□ -1.65
HIF3AQ9Y2N7 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 152.2 ms