Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 KNOP1P3-201ENST00000446933 426 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.57□□□□□ -1.52
RFX1P22670 RNU7-187P-201ENST00000458985 68 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AC092324.1-201ENST00000468671 324 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC5.57□□□□□ -1.52
RFX1P22670 AL049874.1-201ENST00000489560 388 ntBASIC5.57□□□□□ -1.52
RFX1P22670 RN7SL441P-201ENST00000492388 296 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AC022493.1-201ENST00000492984 337 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC5.57□□□□□ -1.52
RFX1P22670 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.57□□□□□ -1.52
RFX1P22670 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.57□□□□□ -1.52
RFX1P22670 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.57□□□□□ -1.52
RFX1P22670 SCARNA16.2-201ENST00000516520 172 ntBASIC5.57□□□□□ -1.52
RFX1P22670 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.57□□□□□ -1.52
RFX1P22670 MED28P6-201ENST00000558776 231 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AC004817.2-201ENST00000561794 651 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AC008269.2-201ENST00000561915 1105 ntBASIC5.57□□□□□ -1.52
RFX1P22670 MIR3149-201ENST00000584629 83 ntBASIC5.57□□□□□ -1.52
RFX1P22670 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC5.57□□□□□ -1.52
RFX1P22670 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.57□□□□□ -1.52
RFX1P22670 AC087783.2-201ENST00000605070 562 ntBASIC5.57□□□□□ -1.52
RFX1P22670 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.57□□□□□ -1.52
RFX1P22670 AL355810.1-201ENST00000614629 552 ntBASIC5.57□□□□□ -1.52
RFX1P22670 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC5.57□□□□□ -1.52
RFX1P22670 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
RFX1P22670 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.57□□□□□ -1.52
RFX1P22670 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.56□□□□□ -1.52
RFX1P22670 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.56□□□□□ -1.52
RFX1P22670 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.56□□□□□ -1.52
RFX1P22670 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
RFX1P22670 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
RFX1P22670 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
RFX1P22670 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RFX1P22670 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RFX1P22670 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
RFX1P22670 AC112198.2-201ENST00000426589 6996 ntBASIC5.56□□□□□ -1.52
RFX1P22670 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RFX1P22670 RNU6-512P-201ENST00000364438 103 ntBASIC5.56□□□□□ -1.52
RFX1P22670 Y_RNA.324-201ENST00000365165 102 ntBASIC5.56□□□□□ -1.52
RFX1P22670 RNU6-1181P-201ENST00000384191 106 ntBASIC5.56□□□□□ -1.52
RFX1P22670 Y_RNA.452-201ENST00000384202 108 ntBASIC5.56□□□□□ -1.52
RFX1P22670 RN7SKP16-201ENST00000410180 299 ntBASIC5.56□□□□□ -1.52
RFX1P22670 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.56□□□□□ -1.52
RFX1P22670 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC5.56□□□□□ -1.52
RFX1P22670 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC5.56□□□□□ -1.52
RFX1P22670 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.56□□□□□ -1.52
RFX1P22670 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.56□□□□□ -1.52
RFX1P22670 GSTA11P-201ENST00000452866 669 ntBASIC5.56□□□□□ -1.52
RFX1P22670 DHFRP3-201ENST00000455595 559 ntBASIC5.56□□□□□ -1.52
RFX1P22670 MTATP8P1-201ENST00000467115 207 ntBASIC5.56□□□□□ -1.52
RFX1P22670 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC5.56□□□□□ -1.52
RFX1P22670 AC022493.2-201ENST00000506122 481 ntBASIC5.56□□□□□ -1.52
RFX1P22670 AC116655.1-201ENST00000508324 901 ntBASIC5.56□□□□□ -1.52
RFX1P22670 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.56□□□□□ -1.52
RFX1P22670 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC5.56□□□□□ -1.52
RFX1P22670 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC5.56□□□□□ -1.52
RFX1P22670 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.56□□□□□ -1.52
RFX1P22670 BNIP3P1-201ENST00000547295 580 ntBASIC5.56□□□□□ -1.52
RFX1P22670 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC5.56□□□□□ -1.52
RFX1P22670 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.56□□□□□ -1.52
RFX1P22670 OR1M4P-201ENST00000589199 287 ntBASIC5.56□□□□□ -1.52
RFX1P22670 AL591516.1-201ENST00000611326 274 ntBASIC5.56□□□□□ -1.52
RFX1P22670 uc_338.18-201ENST00000615451 175 ntBASIC5.56□□□□□ -1.52
RFX1P22670 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
RFX1P22670 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.56□□□□□ -1.52
RFX1P22670 BMS1P21-201ENST00000634565 365 ntBASIC5.56□□□□□ -1.52
RFX1P22670 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
RFX1P22670 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
RFX1P22670 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
RFX1P22670 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.56□□□□□ -1.52
RFX1P22670 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
RFX1P22670 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
RFX1P22670 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
RFX1P22670 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
RFX1P22670 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.55□□□□□ -1.52
RFX1P22670 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
RFX1P22670 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
RFX1P22670 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
RFX1P22670 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
RFX1P22670 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.55□□□□□ -1.52
RFX1P22670 Y_RNA.33-201ENST00000362591 102 ntBASIC5.55□□□□□ -1.52
RFX1P22670 RNU6-1059P-201ENST00000363752 98 ntBASIC5.55□□□□□ -1.52
RFX1P22670 RN7SKP113-201ENST00000363891 295 ntBASIC5.55□□□□□ -1.52
RFX1P22670 Y_RNA.428-201ENST00000384078 102 ntBASIC5.55□□□□□ -1.52
RFX1P22670 Y_RNA.557-201ENST00000384680 107 ntBASIC5.55□□□□□ -1.52
RFX1P22670 AL035079.1-201ENST00000405210 287 ntBASIC5.55□□□□□ -1.52
RFX1P22670 RPS15AP6-201ENST00000420703 385 ntBASIC5.55□□□□□ -1.52
RFX1P22670 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.55□□□□□ -1.52
RFX1P22670 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.55□□□□□ -1.52
RFX1P22670 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.55□□□□□ -1.52
RFX1P22670 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms