Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RN7SL271P-201ENST00000487601 295 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 SNORA40.12-201ENST00000516329 111 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 CENPUP1-201ENST00000526649 1202 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 ZNF192P1-203ENST00000565888 810 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 HMGB1P6-201ENST00000569046 646 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 RPL23AP87-202ENST00000573039 466 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC025627.2-201ENST00000576220 160 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC005261.5-201ENST00000596280 355 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC006254.3-201ENST00000603353 884 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AL353621.2-201ENST00000605340 133 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AL031666.3-201ENST00000609320 1006 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 5S_rRNA.12-201ENST00000617631 107 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 YWHAEP7-203ENST00000622054 312 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 RPS4XP5-202ENST00000449995 1334 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
DKK3Q9UBP4 ZNF734P-201ENST00000419494 1534 ntBASIC4.09□□□□□ -1.75
DKK3Q9UBP4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
DKK3Q9UBP4 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
DKK3Q9UBP4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 RNU6-451P-201ENST00000362921 107 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 RNA5SP283-201ENST00000365604 119 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 MT-TD-201ENST00000387419 68 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 RNU6-1158P-201ENST00000391167 107 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 RPS15AP12-201ENST00000419498 388 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AC007283.2-201ENST00000424739 197 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AL513185.2-201ENST00000425543 193 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 RPL21P112-201ENST00000434403 463 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 PRSS3P4-201ENST00000453323 162 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 PMCHL2-203ENST00000457791 237 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 MTND4P29-201ENST00000503122 1372 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 MTCO2P30-201ENST00000503662 364 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AC114786.4-201ENST00000508771 728 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 FTH1P21-201ENST00000512179 511 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AL355812.1-201ENST00000603215 216 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AL136363.1-201ENST00000605349 337 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 BNIP3P10-201ENST00000605360 577 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 XIST_intron.1-201ENST00000619444 68 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AC006504.8-201ENST00000621046 635 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AC244100.1-202ENST00000621554 382 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AL138713.1-201ENST00000624026 2130 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 AC024614.3-201ENST00000637860 256 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
DKK3Q9UBP4 TNPO1P3-201ENST00000436471 2662 ntBASIC4.08□□□□□ -1.76
DKK3Q9UBP4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.07□□□□□ -1.76
DKK3Q9UBP4 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
DKK3Q9UBP4 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.07□□□□□ -1.76
DKK3Q9UBP4 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
DKK3Q9UBP4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
DKK3Q9UBP4 AL359893.1-201ENST00000447628 1580 ntBASIC4.07□□□□□ -1.76
DKK3Q9UBP4 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.07□□□□□ -1.76
DKK3Q9UBP4 Y_RNA.72-201ENST00000362894 103 ntBASIC4.07□□□□□ -1.76
DKK3Q9UBP4 RNVU1-3-201ENST00000364313 161 ntBASIC4.07□□□□□ -1.76
DKK3Q9UBP4 RNU4-76P-201ENST00000364509 141 ntBASIC4.07□□□□□ -1.76
DKK3Q9UBP4 Y_RNA.263-201ENST00000364659 114 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms