Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
MSH5O43196 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC8.99□□□□□ -0.97
MSH5O43196 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC8.99□□□□□ -0.97
MSH5O43196 PRND-201ENST00000305817 3980 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
MSH5O43196 LINC00284-201ENST00000423211 3208 ntTSL 2 BASIC8.99□□□□□ -0.97
MSH5O43196 BANF2-201ENST00000246090 595 ntAPPRIS P1 TSL 1 (best) BASIC8.99□□□□□ -0.97
MSH5O43196 RNU6-486P-201ENST00000363116 107 ntBASIC8.99□□□□□ -0.97
MSH5O43196 RNA5SP433-201ENST00000364491 114 ntBASIC8.99□□□□□ -0.97
MSH5O43196 Y_RNA.454-201ENST00000384224 113 ntBASIC8.99□□□□□ -0.97
MSH5O43196 RNU6-1055P-201ENST00000391085 107 ntBASIC8.99□□□□□ -0.97
MSH5O43196 RNU6-603P-201ENST00000411403 107 ntBASIC8.99□□□□□ -0.97
MSH5O43196 H3F3BP1-201ENST00000440551 403 ntBASIC8.99□□□□□ -0.97
MSH5O43196 GNG2-203ENST00000553432 577 ntTSL 4 BASIC8.99□□□□□ -0.97
MSH5O43196 FXNP1-201ENST00000555153 337 ntBASIC8.99□□□□□ -0.97
MSH5O43196 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC8.99□□□□□ -0.97
MSH5O43196 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC8.99□□□□□ -0.97
MSH5O43196 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 AL133383.2-201ENST00000622958 2336 ntBASIC8.98□□□□□ -0.97
MSH5O43196 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC8.98□□□□□ -0.97
MSH5O43196 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 MIR518C-201ENST00000384822 101 ntBASIC8.98□□□□□ -0.97
MSH5O43196 RNU2-43P-201ENST00000410306 190 ntBASIC8.98□□□□□ -0.97
MSH5O43196 RNA5SP431-201ENST00000410312 120 ntBASIC8.98□□□□□ -0.97
MSH5O43196 MYL6P3-201ENST00000436904 432 ntBASIC8.98□□□□□ -0.97
MSH5O43196 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC8.98□□□□□ -0.97
MSH5O43196 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC8.98□□□□□ -0.97
MSH5O43196 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC8.98□□□□□ -0.97
MSH5O43196 RNU6-437P-201ENST00000459408 95 ntBASIC8.98□□□□□ -0.97
MSH5O43196 SCARNA6-201ENST00000515982 265 ntBASIC8.98□□□□□ -0.97
MSH5O43196 SNORA31.22-201ENST00000517204 135 ntBASIC8.98□□□□□ -0.97
MSH5O43196 AC107016.1-201ENST00000550463 337 ntBASIC8.98□□□□□ -0.97
MSH5O43196 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC8.98□□□□□ -0.97
MSH5O43196 5S_rRNA.23-201ENST00000612086 102 ntBASIC8.98□□□□□ -0.97
MSH5O43196 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC8.98□□□□□ -0.97
MSH5O43196 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC8.98□□□□□ -0.97
MSH5O43196 USP46-202ENST00000451218 4622 ntTSL 5 BASIC8.97□□□□□ -0.97
MSH5O43196 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC8.97□□□□□ -0.97
MSH5O43196 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC8.97□□□□□ -0.97
MSH5O43196 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
MSH5O43196 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC8.97□□□□□ -0.97
MSH5O43196 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC8.97□□□□□ -0.97
MSH5O43196 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC8.97□□□□□ -0.97
MSH5O43196 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC8.97□□□□□ -0.97
MSH5O43196 SNORA18.3-201ENST00000384122 132 ntBASIC8.97□□□□□ -0.97
MSH5O43196 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
MSH5O43196 AL139281.1-201ENST00000422120 335 ntBASIC8.97□□□□□ -0.97
MSH5O43196 VDAC1P3-201ENST00000434069 851 ntBASIC8.97□□□□□ -0.97
MSH5O43196 AC066616.1-201ENST00000486795 413 ntBASIC8.97□□□□□ -0.97
MSH5O43196 RPL21P129-201ENST00000491732 478 ntBASIC8.97□□□□□ -0.97
MSH5O43196 SNORA43.2-201ENST00000516652 128 ntBASIC8.97□□□□□ -0.97
MSH5O43196 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC8.97□□□□□ -0.97
MSH5O43196 AC067852.5-201ENST00000589299 310 ntBASIC8.97□□□□□ -0.97
MSH5O43196 AL356575.1-201ENST00000603008 283 ntBASIC8.97□□□□□ -0.97
MSH5O43196 AP003357.1-201ENST00000604497 148 ntBASIC8.97□□□□□ -0.97
MSH5O43196 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC8.97□□□□□ -0.97
MSH5O43196 SELE-203ENST00000367775 3389 ntTSL 5 BASIC8.97□□□□□ -0.97
MSH5O43196 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC8.97□□□□□ -0.97
MSH5O43196 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC8.97□□□□□ -0.97
MSH5O43196 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
MSH5O43196 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
MSH5O43196 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.97
MSH5O43196 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC8.96□□□□□ -0.97
MSH5O43196 IBTK-201ENST00000306270 6054 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.97
MSH5O43196 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC8.96□□□□□ -0.98
MSH5O43196 Y_RNA.96-201ENST00000363092 109 ntBASIC8.96□□□□□ -0.98
MSH5O43196 RNU1-140P-201ENST00000365040 165 ntBASIC8.96□□□□□ -0.98
MSH5O43196 AL078599.1-201ENST00000402075 293 ntBASIC8.96□□□□□ -0.98
MSH5O43196 RN7SKP156-201ENST00000410308 342 ntBASIC8.96□□□□□ -0.98
MSH5O43196 AL513331.1-201ENST00000411908 397 ntBASIC8.96□□□□□ -0.98
MSH5O43196 RPS26P42-201ENST00000413485 326 ntBASIC8.96□□□□□ -0.98
MSH5O43196 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC8.96□□□□□ -0.98
MSH5O43196 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC8.96□□□□□ -0.98
MSH5O43196 RPL7AP71-201ENST00000451120 739 ntBASIC8.96□□□□□ -0.98
MSH5O43196 AC018797.1-201ENST00000510791 255 ntBASIC8.96□□□□□ -0.98
MSH5O43196 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC8.96□□□□□ -0.98
MSH5O43196 AC025281.1-201ENST00000567026 265 ntBASIC8.96□□□□□ -0.98
MSH5O43196 RN7SL199P-201ENST00000578752 281 ntBASIC8.96□□□□□ -0.98
MSH5O43196 RN7SL656P-201ENST00000579044 281 ntBASIC8.96□□□□□ -0.98
MSH5O43196 RN7SL270P-201ENST00000579643 281 ntBASIC8.96□□□□□ -0.98
MSH5O43196 MIR4777-201ENST00000583710 86 ntBASIC8.96□□□□□ -0.98
MSH5O43196 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC8.96□□□□□ -0.98
MSH5O43196 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC8.96□□□□□ -0.98
MSH5O43196 AC006262.3-201ENST00000597337 258 ntTSL 3 BASIC8.96□□□□□ -0.98
MSH5O43196 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC8.96□□□□□ -0.98
MSH5O43196 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
MSH5O43196 AL592437.2-201ENST00000421655 2434 ntBASIC8.96□□□□□ -0.98
MSH5O43196 ARHGAP42P3-201ENST00000443989 2508 ntBASIC8.96□□□□□ -0.98
MSH5O43196 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC8.96□□□□□ -0.98
MSH5O43196 ZNF311-203ENST00000377179 2730 ntAPPRIS P1 TSL 5 BASIC8.96□□□□□ -0.98
MSH5O43196 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.98
MSH5O43196 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
MSH5O43196 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC8.95□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 117.4 ms