Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DAP3P1-201ENST00000441522 278 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AL138752.1-201ENST00000452964 351 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AL133445.1-201ENST00000467051 452 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AC034114.1-201ENST00000520293 285 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 MIR1273E-201ENST00000581165 102 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 OR1M4P-201ENST00000589199 287 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AL158827.2-201ENST00000602494 330 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 MIR6729-201ENST00000618194 65 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AL731566.2-201ENST00000618971 317 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AL691447.3-201ENST00000635020 330 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 SMG1P4-204ENST00000523028 4131 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-1249P-201ENST00000363237 111 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.200-201ENST00000364018 102 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RNA5SP510-201ENST00000364697 99 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-596P-201ENST00000365395 98 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-611P-201ENST00000384276 104 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RNA5SP487-201ENST00000410186 122 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-712P-201ENST00000410558 100 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.793-201ENST00000411222 111 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 SSXP9-201ENST00000417503 292 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC096920.1-201ENST00000423991 241 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC073063.1-201ENST00000434352 607 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 snoU13.3-201ENST00000459441 104 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RN7SL717P-201ENST00000478343 297 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RN7SL814P-201ENST00000487715 300 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 MTND3P25-201ENST00000509243 135 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC008958.1-201ENST00000511047 682 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC113155.1-201ENST00000511141 769 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 IGKV2-23-201ENST00000518729 323 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC004024.1-201ENST00000549244 247 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 PRPF19P1-201ENST00000584766 898 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC008521.2-201ENST00000591021 259 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 MIR15A-201ENST00000607334 83 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 MIR6862-1-201ENST00000613016 70 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 MIR6862-2-201ENST00000614755 70 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 SNORD39.4-201ENST00000620099 78 ntBASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HIF3AQ9Y2N7 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 MAPK10-304ENST00000641341 3984 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 MIR133B-201ENST00000362210 119 ntBASIC4.79□□□□□ -1.64
HIF3AQ9Y2N7 RNA5SP234-201ENST00000363916 119 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms