Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 NCAPGP2-201ENST00000557911 754 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC025281.1-201ENST00000567026 265 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 MTND1P8-201ENST00000571424 950 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 HMGN2P15-201ENST00000585707 270 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 VN1R92P-201ENST00000598511 928 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC072039.2-201ENST00000608883 439 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC004908.2-201ENST00000609090 574 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC013470.4-201ENST00000619978 986 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC3.19□□□□□ -1.9
VMP1Q96GC9 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.19□□□□□ -1.9
VMP1Q96GC9 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
VMP1Q96GC9 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
VMP1Q96GC9 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VMP1Q96GC9 RNU6-723P-201ENST00000383973 107 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 MIR627-201ENST00000384979 97 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 MIR1305-201ENST00000408300 86 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 PIGPP2-201ENST00000411569 458 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 HSFY4P-201ENST00000415994 1181 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC097713.2-201ENST00000430199 356 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 RSU1P2-202ENST00000437884 485 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 FAM103A2P-201ENST00000444122 354 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 RPL12P25-201ENST00000455592 494 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 CENPBD1P1-201ENST00000464061 469 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 RPL23AP67-201ENST00000465341 474 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC106872.3-201ENST00000495104 446 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC113155.1-201ENST00000511141 769 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 IGKV2-26-201ENST00000518305 343 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 CASC16-202ENST00000563844 610 ntTSL 3 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC103810.1-201ENST00000579873 453 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 AL606834.2-201ENST00000602954 668 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 SRGNP1-201ENST00000603392 451 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC009974.1-201ENST00000608881 455 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC079395.3-201ENST00000615161 484 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 AC112204.3-201ENST00000623822 332 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 AL356596.1-201ENST00000624230 379 ntBASIC3.18□□□□□ -1.9
VMP1Q96GC9 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
VMP1Q96GC9 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.18□□□□□ -1.9
VMP1Q96GC9 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
VMP1Q96GC9 MTND5P33-201ENST00000571250 1450 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
VMP1Q96GC9 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VMP1Q96GC9 CXADR-203ENST00000400165 603 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VMP1Q96GC9 CCNG1P1-201ENST00000406783 885 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 RPL21P24-201ENST00000413752 448 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 USP9YP13-201ENST00000417797 480 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 SDR42E1P3-201ENST00000438345 502 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 AC008155.2-201ENST00000464337 397 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 AC074250.1-201ENST00000511117 192 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 AP000857.1-201ENST00000532151 543 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VMP1Q96GC9 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VMP1Q96GC9 AL133153.1-201ENST00000557756 303 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 AC097468.3-201ENST00000607956 456 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 AC008498.1-201ENST00000613012 531 ntBASIC3.17□□□□□ -1.9
VMP1Q96GC9 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.17□□□□□ -1.9
VMP1Q96GC9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VMP1Q96GC9 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
VMP1Q96GC9 ZNF833P-201ENST00000424938 1494 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VMP1Q96GC9 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VMP1Q96GC9 CCT4P2-201ENST00000233836 1548 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 RNU6-884P-201ENST00000363889 107 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 MIR888-201ENST00000401186 77 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 AC098614.2-201ENST00000426040 255 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 OR2AS1P-201ENST00000427827 319 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
VMP1Q96GC9 ELOCP30-201ENST00000447108 299 ntBASIC3.16□□□□□ -1.9
VMP1Q96GC9 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC3.16□□□□□ -1.9
VMP1Q96GC9 AC126182.1-201ENST00000478134 357 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 151.9 ms