Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
RNF4P78317 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
RNF4P78317 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
RNF4P78317 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
RNF4P78317 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
RNF4P78317 RNU6-490P-201ENST00000362985 107 ntBASIC4.62□□□□□ -1.67
RNF4P78317 SNORD3H-201ENST00000384486 214 ntBASIC4.62□□□□□ -1.67
RNF4P78317 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
RNF4P78317 MIR550A3-201ENST00000390735 95 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.62□□□□□ -1.67
RNF4P78317 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.62□□□□□ -1.67
RNF4P78317 AL590762.4-201ENST00000425885 253 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.62□□□□□ -1.67
RNF4P78317 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.62□□□□□ -1.67
RNF4P78317 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.62□□□□□ -1.67
RNF4P78317 AC097713.2-201ENST00000430199 356 ntBASIC4.62□□□□□ -1.67
RNF4P78317 HMGB1P27-201ENST00000431429 603 ntBASIC4.62□□□□□ -1.67
RNF4P78317 RPL23AP50-201ENST00000434149 455 ntBASIC4.62□□□□□ -1.67
RNF4P78317 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC4.62□□□□□ -1.67
RNF4P78317 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AC008264.1-201ENST00000447612 367 ntBASIC4.62□□□□□ -1.67
RNF4P78317 IFNWP4-201ENST00000453148 294 ntBASIC4.62□□□□□ -1.67
RNF4P78317 HMGB3P30-201ENST00000457863 606 ntBASIC4.62□□□□□ -1.67
RNF4P78317 SNORD5.1-201ENST00000458800 75 ntBASIC4.62□□□□□ -1.67
RNF4P78317 RNU7-187P-201ENST00000458985 68 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AC128713.1-201ENST00000471495 306 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AP000926.1-201ENST00000479573 241 ntBASIC4.62□□□□□ -1.67
RNF4P78317 SNORA31.3-201ENST00000516029 96 ntBASIC4.62□□□□□ -1.67
RNF4P78317 CDH12P4-201ENST00000517835 295 ntBASIC4.62□□□□□ -1.67
RNF4P78317 CDH12P3-201ENST00000517935 295 ntBASIC4.62□□□□□ -1.67
RNF4P78317 CDH12P1-201ENST00000518435 295 ntBASIC4.62□□□□□ -1.67
RNF4P78317 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
RNF4P78317 AC104576.1-201ENST00000524225 88 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AC006349.1-201ENST00000555526 235 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC4.62□□□□□ -1.67
RNF4P78317 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.62□□□□□ -1.67
RNF4P78317 ELOCP5-201ENST00000604924 333 ntBASIC4.62□□□□□ -1.67
RNF4P78317 HMGN2P28-201ENST00000606102 262 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.62□□□□□ -1.67
RNF4P78317 AL023881.1-201ENST00000621088 301 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AL353748.2-201ENST00000622148 471 ntBASIC4.62□□□□□ -1.67
RNF4P78317 MIR6730-201ENST00000622213 67 ntBASIC4.62□□□□□ -1.67
RNF4P78317 AC067931.1-201ENST00000624190 671 ntBASIC4.62□□□□□ -1.67
RNF4P78317 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC4.62□□□□□ -1.67
RNF4P78317 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.62□□□□□ -1.67
RNF4P78317 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
RNF4P78317 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.62□□□□□ -1.67
RNF4P78317 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.62□□□□□ -1.67
RNF4P78317 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
RNF4P78317 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.62□□□□□ -1.67
RNF4P78317 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
RNF4P78317 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC4.62□□□□□ -1.67
RNF4P78317 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
RNF4P78317 PRO1804-201ENST00000623780 2050 ntBASIC4.61□□□□□ -1.67
RNF4P78317 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
RNF4P78317 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
RNF4P78317 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
RNF4P78317 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
RNF4P78317 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
RNF4P78317 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.61□□□□□ -1.67
RNF4P78317 RNU6-1318P-201ENST00000365389 103 ntBASIC4.61□□□□□ -1.67
RNF4P78317 RNU6-356P-201ENST00000384140 107 ntBASIC4.61□□□□□ -1.67
RNF4P78317 MIR1302-3-201ENST00000408128 138 ntBASIC4.61□□□□□ -1.67
RNF4P78317 AC243428.1-201ENST00000421099 264 ntBASIC4.61□□□□□ -1.67
RNF4P78317 OR2AM1P-201ENST00000422137 422 ntBASIC4.61□□□□□ -1.67
RNF4P78317 AC079780.1-201ENST00000428259 207 ntBASIC4.61□□□□□ -1.67
RNF4P78317 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC4.61□□□□□ -1.67
RNF4P78317 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC4.61□□□□□ -1.67
RNF4P78317 RPL7AP61-201ENST00000443410 636 ntBASIC4.61□□□□□ -1.67
RNF4P78317 AC112498.1-201ENST00000444401 332 ntBASIC4.61□□□□□ -1.67
RNF4P78317 AC073587.1-201ENST00000447093 876 ntBASIC4.61□□□□□ -1.67
RNF4P78317 PRDX3P3-201ENST00000447765 522 ntBASIC4.61□□□□□ -1.67
RNF4P78317 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC4.61□□□□□ -1.67
RNF4P78317 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.61□□□□□ -1.67
RNF4P78317 AC026979.1-201ENST00000492525 396 ntBASIC4.61□□□□□ -1.67
RNF4P78317 AC015911.1-201ENST00000495111 156 ntBASIC4.61□□□□□ -1.67
RNF4P78317 ERHP1-201ENST00000523006 310 ntBASIC4.61□□□□□ -1.67
RNF4P78317 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.61□□□□□ -1.67
RNF4P78317 EDDM3DP-201ENST00000554692 434 ntBASIC4.61□□□□□ -1.67
RNF4P78317 AC068446.3-201ENST00000555285 382 ntBASIC4.61□□□□□ -1.67
RNF4P78317 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
RNF4P78317 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.61□□□□□ -1.67
RNF4P78317 U4.1-201ENST00000620349 87 ntBASIC4.61□□□□□ -1.67
RNF4P78317 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
RNF4P78317 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.61□□□□□ -1.67
RNF4P78317 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
RNF4P78317 FAM91A3P-201ENST00000456826 2544 ntBASIC4.61□□□□□ -1.67
RNF4P78317 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
RNF4P78317 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
RNF4P78317 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
RNF4P78317 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
RNF4P78317 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
RNF4P78317 TLK1P1-201ENST00000456760 2440 ntBASIC4.6□□□□□ -1.67
RNF4P78317 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
RNF4P78317 Y_RNA.153-201ENST00000363615 91 ntBASIC4.6□□□□□ -1.67
RNF4P78317 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
RNF4P78317 UBBP2-201ENST00000376781 231 ntBASIC4.6□□□□□ -1.67
RNF4P78317 Y_RNA.428-201ENST00000384078 102 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms