Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
CUX1P39880 RPL31P2-201ENST00000413849 377 ntBASIC2.2□□□□□ -2.06
CUX1P39880 UBE2V1P13-201ENST00000436983 439 ntBASIC2.2□□□□□ -2.06
CUX1P39880 SNRPGP13-201ENST00000442212 177 ntBASIC2.2□□□□□ -2.06
CUX1P39880 HMGB1P26-201ENST00000452520 628 ntBASIC2.2□□□□□ -2.06
CUX1P39880 AC093767.1-201ENST00000504523 156 ntBASIC2.2□□□□□ -2.06
CUX1P39880 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC2.2□□□□□ -2.06
CUX1P39880 RPL21P5-201ENST00000554662 472 ntBASIC2.2□□□□□ -2.06
CUX1P39880 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC2.2□□□□□ -2.06
CUX1P39880 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.2□□□□□ -2.06
CUX1P39880 MTATP6P3-201ENST00000581686 676 ntBASIC2.2□□□□□ -2.06
CUX1P39880 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.2□□□□□ -2.06
CUX1P39880 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CUX1P39880 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC2.19□□□□□ -2.06
CUX1P39880 SNORD114-27-201ENST00000363766 70 ntBASIC2.19□□□□□ -2.06
CUX1P39880 RNU4-41P-201ENST00000364426 143 ntBASIC2.19□□□□□ -2.06
CUX1P39880 MTCYBP7-201ENST00000419540 1134 ntBASIC2.19□□□□□ -2.06
CUX1P39880 RPS29P1-201ENST00000465274 159 ntBASIC2.19□□□□□ -2.06
CUX1P39880 AC006499.2-201ENST00000513470 337 ntBASIC2.19□□□□□ -2.06
CUX1P39880 AC022634.1-201ENST00000520765 532 ntBASIC2.19□□□□□ -2.06
CUX1P39880 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.19□□□□□ -2.06
CUX1P39880 CBX3P2-202ENST00000583365 535 ntBASIC2.19□□□□□ -2.06
CUX1P39880 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC2.19□□□□□ -2.06
CUX1P39880 AC004241.3-201ENST00000611728 517 ntBASIC2.19□□□□□ -2.06
CUX1P39880 CDC27P3-201ENST00000635418 1910 ntBASIC2.19□□□□□ -2.06
CUX1P39880 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CUX1P39880 PABPC1P9-201ENST00000426076 1612 ntBASIC2.18□□□□□ -2.06
CUX1P39880 AL030996.1-201ENST00000411430 235 ntBASIC2.18□□□□□ -2.06
CUX1P39880 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.18□□□□□ -2.06
CUX1P39880 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.18□□□□□ -2.06
CUX1P39880 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC2.18□□□□□ -2.06
CUX1P39880 AC104472.2-201ENST00000469035 601 ntBASIC2.18□□□□□ -2.06
CUX1P39880 HMGN2P13-201ENST00000476476 274 ntBASIC2.18□□□□□ -2.06
CUX1P39880 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.18□□□□□ -2.06
CUX1P39880 AC002546.1-201ENST00000588041 2504 ntBASIC2.17□□□□□ -2.06
CUX1P39880 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CUX1P39880 SNORD56.5-201ENST00000364281 72 ntBASIC2.17□□□□□ -2.06
CUX1P39880 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.17□□□□□ -2.06
CUX1P39880 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC2.17□□□□□ -2.06
CUX1P39880 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC2.17□□□□□ -2.06
CUX1P39880 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.17□□□□□ -2.06
CUX1P39880 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC2.17□□□□□ -2.06
CUX1P39880 AC006249.1-201ENST00000621223 471 ntBASIC2.17□□□□□ -2.06
CUX1P39880 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
CUX1P39880 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2.17□□□□□ -2.06
CUX1P39880 ANAPC10P1-201ENST00000395991 556 ntBASIC2.17□□□□□ -2.06
CUX1P39880 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.17□□□□□ -2.06
CUX1P39880 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.17□□□□□ -2.06
CUX1P39880 HMGN2P21-201ENST00000447764 270 ntBASIC2.17□□□□□ -2.06
CUX1P39880 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC2.17□□□□□ -2.06
CUX1P39880 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.17□□□□□ -2.06
CUX1P39880 AP002345.1-201ENST00000456493 928 ntBASIC2.17□□□□□ -2.06
CUX1P39880 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CUX1P39880 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.16□□□□□ -2.06
CUX1P39880 MIR625-201ENST00000385047 85 ntBASIC2.16□□□□□ -2.06
CUX1P39880 BX682237.1-201ENST00000415016 335 ntBASIC2.16□□□□□ -2.06
CUX1P39880 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CUX1P39880 HMGN1P33-201ENST00000432945 451 ntBASIC2.16□□□□□ -2.06
CUX1P39880 CKS1BP5-201ENST00000434172 273 ntBASIC2.16□□□□□ -2.06
CUX1P39880 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.16□□□□□ -2.06
CUX1P39880 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.16□□□□□ -2.06
CUX1P39880 Z96811.1-201ENST00000445880 108 ntBASIC2.16□□□□□ -2.06
CUX1P39880 SSXP4-201ENST00000451349 245 ntBASIC2.16□□□□□ -2.06
CUX1P39880 RPS3AP22-201ENST00000488297 769 ntBASIC2.16□□□□□ -2.06
CUX1P39880 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
CUX1P39880 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC2.16□□□□□ -2.06
CUX1P39880 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC2.16□□□□□ -2.06
CUX1P39880 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC2.16□□□□□ -2.06
CUX1P39880 MIR5194-201ENST00000582634 120 ntBASIC2.16□□□□□ -2.06
CUX1P39880 AC097504.2-201ENST00000608088 454 ntBASIC2.16□□□□□ -2.06
CUX1P39880 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC2.16□□□□□ -2.06
CUX1P39880 AP002907.1-201ENST00000606361 1430 ntBASIC2.15□□□□□ -2.06
CUX1P39880 AP000648.3-201ENST00000623539 4507 ntBASIC2.15□□□□□ -2.06
CUX1P39880 Y_RNA.30-201ENST00000362572 97 ntBASIC2.15□□□□□ -2.07
CUX1P39880 RNU2-40P-201ENST00000410833 196 ntBASIC2.15□□□□□ -2.07
CUX1P39880 AC013268.2-201ENST00000420753 337 ntBASIC2.15□□□□□ -2.07
CUX1P39880 MTND1P18-201ENST00000448191 573 ntBASIC2.15□□□□□ -2.07
CUX1P39880 SEM1P1-201ENST00000506694 209 ntBASIC2.15□□□□□ -2.07
CUX1P39880 ARL2BPP4-201ENST00000506854 471 ntBASIC2.15□□□□□ -2.07
CUX1P39880 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.15□□□□□ -2.07
CUX1P39880 AC087808.1-201ENST00000520501 361 ntBASIC2.15□□□□□ -2.07
CUX1P39880 HSPE1P3-201ENST00000559254 309 ntBASIC2.15□□□□□ -2.07
CUX1P39880 MIR3122-201ENST00000577243 73 ntBASIC2.15□□□□□ -2.07
CUX1P39880 AC112503.2-201ENST00000609005 552 ntBASIC2.15□□□□□ -2.07
CUX1P39880 AL356118.1-201ENST00000635272 1078 ntBASIC2.15□□□□□ -2.07
CUX1P39880 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC2.15□□□□□ -2.07
CUX1P39880 AL157700.1-201ENST00000561973 1432 ntBASIC2.15□□□□□ -2.07
CUX1P39880 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.15□□□□□ -2.07
CUX1P39880 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CUX1P39880 DNAJC19P6-201ENST00000401853 280 ntBASIC2.14□□□□□ -2.07
CUX1P39880 RPS12P24-201ENST00000412619 387 ntBASIC2.14□□□□□ -2.07
CUX1P39880 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CUX1P39880 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.14□□□□□ -2.07
CUX1P39880 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CUX1P39880 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.14□□□□□ -2.07
CUX1P39880 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC2.14□□□□□ -2.07
CUX1P39880 AP001180.3-201ENST00000582221 145 ntBASIC2.14□□□□□ -2.07
CUX1P39880 AC008121.3-201ENST00000618726 433 ntBASIC2.14□□□□□ -2.07
CUX1P39880 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
CUX1P39880 MIR520E-201ENST00000384867 87 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms