Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.36□□□□□ -2.03
SHOX2O60902 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC2.36□□□□□ -2.03
SHOX2O60902 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.36□□□□□ -2.03
SHOX2O60902 AL671309.1-201ENST00000603750 544 ntBASIC2.36□□□□□ -2.03
SHOX2O60902 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.36□□□□□ -2.03
SHOX2O60902 U4.3-201ENST00000621047 82 ntBASIC2.36□□□□□ -2.03
SHOX2O60902 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.36□□□□□ -2.03
SHOX2O60902 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.36□□□□□ -2.03
SHOX2O60902 AC009812.4-201ENST00000569134 1805 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 HSPE1P11-201ENST00000339579 310 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 RNA5SP138-201ENST00000365098 114 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 Y_RNA.355-201ENST00000365462 98 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 RNU6-198P-201ENST00000384258 104 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 MIR7-2-201ENST00000384970 110 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 BEND7P1-201ENST00000422058 457 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 NUP35P1-201ENST00000422734 947 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 RPL7L1P10-201ENST00000427790 463 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.35□□□□□ -2.03
SHOX2O60902 AL592447.1-201ENST00000447592 540 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 CCNB1IP1P3-201ENST00000454702 829 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 RNU7-140P-201ENST00000459546 60 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 AL049714.1-201ENST00000466686 347 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SHOX2O60902 NAA50-206ENST00000493454 964 ntTSL 2 BASIC2.35□□□□□ -2.03
SHOX2O60902 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.35□□□□□ -2.03
SHOX2O60902 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC2.35□□□□□ -2.03
SHOX2O60902 AC091860.1-201ENST00000505723 432 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC2.35□□□□□ -2.03
SHOX2O60902 AC112518.2-201ENST00000508565 425 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 AC114781.4-201ENST00000513707 639 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 RN7SKP132-201ENST00000516001 208 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SHOX2O60902 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SHOX2O60902 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC2.35□□□□□ -2.03
SHOX2O60902 AC015688.2-201ENST00000584523 262 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2.35□□□□□ -2.03
SHOX2O60902 AL031176.1-201ENST00000604554 466 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 AC024560.3-201ENST00000608482 349 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC2.35□□□□□ -2.03
SHOX2O60902 AC046143.2-201ENST00000609789 160 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
SHOX2O60902 AC025588.4-201ENST00000615802 908 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC2.35□□□□□ -2.03
SHOX2O60902 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
SHOX2O60902 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
SHOX2O60902 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC2.35□□□□□ -2.03
SHOX2O60902 Z82209.1-201ENST00000422141 2135 ntBASIC2.35□□□□□ -2.03
SHOX2O60902 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.03
SHOX2O60902 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.03
SHOX2O60902 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.34□□□□□ -2.03
SHOX2O60902 RNU1-105P-201ENST00000363470 161 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 SNORD114-30-201ENST00000364448 72 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 AL035405.1-201ENST00000400795 710 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC2.34□□□□□ -2.03
SHOX2O60902 AC092427.1-202ENST00000430569 476 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.34□□□□□ -2.03
SHOX2O60902 AL512661.1-201ENST00000434586 1253 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.34□□□□□ -2.03
SHOX2O60902 LINC00888-204ENST00000487386 421 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 CDC42P4-201ENST00000510507 563 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 RNU5A-7P-201ENST00000515979 116 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 CASP1P1-201ENST00000526345 212 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.34□□□□□ -2.03
SHOX2O60902 CR383656.7-201ENST00000548164 174 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.34□□□□□ -2.03
SHOX2O60902 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.34□□□□□ -2.03
SHOX2O60902 HMGB1P6-201ENST00000569046 646 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 MIR5002-201ENST00000584713 97 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 VN1R90P-201ENST00000595717 726 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 MIR6840-201ENST00000611937 71 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 AC004852.3-201ENST00000614131 326 ntBASIC2.34□□□□□ -2.03
SHOX2O60902 AC135776.4-201ENST00000624300 1904 ntBASIC2.34□□□□□ -2.04
SHOX2O60902 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.34□□□□□ -2.04
SHOX2O60902 WWP1P1-201ENST00000466609 2769 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.33□□□□□ -2.04
SHOX2O60902 MTND4P1-201ENST00000457501 1466 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
SHOX2O60902 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC2.33□□□□□ -2.04
SHOX2O60902 RNU6-353P-201ENST00000364266 108 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 RNU4-52P-201ENST00000384209 138 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 AL591416.1-201ENST00000404015 867 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 AL133264.1-201ENST00000407157 562 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 MTND3P20-201ENST00000407663 186 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 RNU2-43P-201ENST00000410306 190 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 RNU6-193P-201ENST00000410977 107 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 AL136133.1-201ENST00000413694 376 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 HMGB1P11-201ENST00000413899 637 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.33□□□□□ -2.04
SHOX2O60902 AC092634.6-201ENST00000418558 192 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.33□□□□□ -2.04
SHOX2O60902 MYL8P-204ENST00000431574 518 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 AC024082.2-201ENST00000434771 238 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 AC090774.1-201ENST00000435925 246 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC2.33□□□□□ -2.04
SHOX2O60902 AC011753.1-201ENST00000451001 220 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 PNPLA4P1-201ENST00000458328 305 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 XACT-201ENST00000468762 497 ntTSL 5 BASIC2.33□□□□□ -2.04
SHOX2O60902 AC128713.1-201ENST00000471495 306 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 OR52A4P-202ENST00000481634 799 ntBASIC2.33□□□□□ -2.04
SHOX2O60902 RPL23AP70-201ENST00000483361 460 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms