Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 AL512604.3-201ENST00000569583 964 ntBASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TM9SF3Q9HD45 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 CKBP1-201ENST00000565489 1086 ntBASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 KRT8P41-201ENST00000533985 1514 ntBASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TM9SF3Q9HD45 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TM9SF3Q9HD45 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.08■□□□□ 0.65
TM9SF3Q9HD45 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 AL031432.5-201ENST00000641059 760 ntBASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
TM9SF3Q9HD45 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TM9SF3Q9HD45 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms