Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 AC092119.3-201ENST00000612618 583 ntBASIC24.31■■□□□ 1.48
USP42Q9H9J4 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
USP42Q9H9J4 MED17-221ENST00000639724 2317 ntTSL 5 BASIC24.31■■□□□ 1.48
USP42Q9H9J4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC24.3■■□□□ 1.48
USP42Q9H9J4 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 ILF2-202ENST00000368681 726 ntTSL 2 BASIC24.3■■□□□ 1.48
USP42Q9H9J4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC24.3■■□□□ 1.48
USP42Q9H9J4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC24.3■■□□□ 1.48
USP42Q9H9J4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC24.3■■□□□ 1.48
USP42Q9H9J4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC24.3■■□□□ 1.48
USP42Q9H9J4 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC24.3■■□□□ 1.48
USP42Q9H9J4 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
USP42Q9H9J4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
USP42Q9H9J4 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC24.29■■□□□ 1.48
USP42Q9H9J4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
USP42Q9H9J4 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC24.29■■□□□ 1.48
USP42Q9H9J4 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC24.29■■□□□ 1.48
USP42Q9H9J4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 TBC1D3P2-202ENST00000577902 1649 ntBASIC24.28■■□□□ 1.48
USP42Q9H9J4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC24.28■■□□□ 1.48
USP42Q9H9J4 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC24.28■■□□□ 1.48
USP42Q9H9J4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC24.28■■□□□ 1.48
USP42Q9H9J4 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC24.28■■□□□ 1.48
USP42Q9H9J4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC24.28■■□□□ 1.48
USP42Q9H9J4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC24.28■■□□□ 1.48
USP42Q9H9J4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC24.28■■□□□ 1.48
USP42Q9H9J4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP42Q9H9J4 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC24.28■■□□□ 1.48
USP42Q9H9J4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC24.27■■□□□ 1.48
USP42Q9H9J4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
USP42Q9H9J4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP42Q9H9J4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC24.27■■□□□ 1.48
USP42Q9H9J4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP42Q9H9J4 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USP42Q9H9J4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP42Q9H9J4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.27■■□□□ 1.48
USP42Q9H9J4 AL645929.1-201ENST00000420084 975 ntBASIC24.27■■□□□ 1.48
USP42Q9H9J4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC24.27■■□□□ 1.48
USP42Q9H9J4 CR769767.2-201ENST00000622735 460 ntBASIC24.27■■□□□ 1.48
USP42Q9H9J4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP42Q9H9J4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USP42Q9H9J4 AC125437.2-201ENST00000625180 2167 ntBASIC24.27■■□□□ 1.48
USP42Q9H9J4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP42Q9H9J4 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP42Q9H9J4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP42Q9H9J4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP42Q9H9J4 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USP42Q9H9J4 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC24.26■■□□□ 1.47
USP42Q9H9J4 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC24.25■■□□□ 1.47
USP42Q9H9J4 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP42Q9H9J4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC24.25■■□□□ 1.47
USP42Q9H9J4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
USP42Q9H9J4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP42Q9H9J4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP42Q9H9J4 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC24.25■■□□□ 1.47
USP42Q9H9J4 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC24.25■■□□□ 1.47
USP42Q9H9J4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms