Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
LIME1Q9H400 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.77■□□□□ 0.28
LIME1Q9H400 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.77■□□□□ 0.28
LIME1Q9H400 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIME1Q9H400 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
LIME1Q9H400 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
LIME1Q9H400 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.77■□□□□ 0.28
LIME1Q9H400 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIME1Q9H400 PCED1CP-201ENST00000419887 785 ntBASIC16.77■□□□□ 0.28
LIME1Q9H400 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
LIME1Q9H400 AC092647.4-201ENST00000457211 535 ntBASIC16.77■□□□□ 0.28
LIME1Q9H400 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.77■□□□□ 0.28
LIME1Q9H400 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.77■□□□□ 0.28
LIME1Q9H400 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC16.77■□□□□ 0.28
LIME1Q9H400 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIME1Q9H400 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.77■□□□□ 0.27
LIME1Q9H400 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.77■□□□□ 0.27
LIME1Q9H400 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LIME1Q9H400 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIME1Q9H400 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.77■□□□□ 0.27
LIME1Q9H400 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.77■□□□□ 0.27
LIME1Q9H400 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
LIME1Q9H400 AC093484.2-201ENST00000580996 2166 ntBASIC16.77■□□□□ 0.27
LIME1Q9H400 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.77■□□□□ 0.27
LIME1Q9H400 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
LIME1Q9H400 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.77■□□□□ 0.27
LIME1Q9H400 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.76■□□□□ 0.27
LIME1Q9H400 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC16.76■□□□□ 0.27
LIME1Q9H400 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.76■□□□□ 0.27
LIME1Q9H400 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 DUSP5P1-201ENST00000441325 1139 ntBASIC16.76■□□□□ 0.27
LIME1Q9H400 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.76■□□□□ 0.27
LIME1Q9H400 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.76■□□□□ 0.27
LIME1Q9H400 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC16.76■□□□□ 0.27
LIME1Q9H400 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC16.76■□□□□ 0.27
LIME1Q9H400 AP000692.2-201ENST00000608391 879 ntBASIC16.76■□□□□ 0.27
LIME1Q9H400 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.76■□□□□ 0.27
LIME1Q9H400 AC011298.2-201ENST00000617989 482 ntBASIC16.76■□□□□ 0.27
LIME1Q9H400 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 RCC2P6-201ENST00000526625 1557 ntBASIC16.76■□□□□ 0.27
LIME1Q9H400 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC16.76■□□□□ 0.27
LIME1Q9H400 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
LIME1Q9H400 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
LIME1Q9H400 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.75■□□□□ 0.27
LIME1Q9H400 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
LIME1Q9H400 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.75■□□□□ 0.27
LIME1Q9H400 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC16.75■□□□□ 0.27
LIME1Q9H400 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
LIME1Q9H400 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.75■□□□□ 0.27
LIME1Q9H400 FAM86EP-206ENST00000510506 987 ntBASIC16.75■□□□□ 0.27
LIME1Q9H400 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.75■□□□□ 0.27
LIME1Q9H400 AC011558.1-201ENST00000623459 338 ntBASIC16.75■□□□□ 0.27
LIME1Q9H400 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.75■□□□□ 0.27
LIME1Q9H400 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LIME1Q9H400 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
LIME1Q9H400 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
LIME1Q9H400 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
LIME1Q9H400 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC16.75■□□□□ 0.27
LIME1Q9H400 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
LIME1Q9H400 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.74■□□□□ 0.27
LIME1Q9H400 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.74■□□□□ 0.27
LIME1Q9H400 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
LIME1Q9H400 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.74■□□□□ 0.27
LIME1Q9H400 AC026396.1-201ENST00000419388 421 ntBASIC16.74■□□□□ 0.27
LIME1Q9H400 MFAP1P1-201ENST00000442257 1255 ntBASIC16.74■□□□□ 0.27
LIME1Q9H400 COX11P1-201ENST00000489116 835 ntBASIC16.74■□□□□ 0.27
LIME1Q9H400 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.74■□□□□ 0.27
LIME1Q9H400 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms