Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 PMS2P7-201ENST00000506558 1336 ntBASIC18.92■□□□□ 0.62
VPS13AQ96RL7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 AC024243.1-201ENST00000609234 778 ntBASIC18.92■□□□□ 0.62
VPS13AQ96RL7 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
VPS13AQ96RL7 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 KRT18P67-201ENST00000432816 1264 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 LINC00265-3P-201ENST00000447588 903 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 RPL13AP23-201ENST00000480739 586 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 AP001005.1-201ENST00000571755 1248 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 AC140113.2-201ENST00000604370 208 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 AL117328.2-201ENST00000624617 1940 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 GPAT2P1-201ENST00000444924 1672 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 AC064862.7-201ENST00000604520 867 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 AC139887.3-201ENST00000568585 713 ntBASIC18.91■□□□□ 0.62
VPS13AQ96RL7 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS13AQ96RL7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 AF238378.1-201ENST00000526806 358 ntBASIC18.9■□□□□ 0.62
VPS13AQ96RL7 AC106730.1-201ENST00000566722 1090 ntBASIC18.9■□□□□ 0.62
VPS13AQ96RL7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 PCDHAC2-203ENST00000615316 3011 ntBASIC18.9■□□□□ 0.62
VPS13AQ96RL7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 MIR662-201ENST00000384847 95 ntBASIC18.9■□□□□ 0.62
VPS13AQ96RL7 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VPS13AQ96RL7 RNF126P1-202ENST00000569893 925 ntBASIC18.89■□□□□ 0.62
VPS13AQ96RL7 TERC-201ENST00000602385 541 ntBASIC18.89■□□□□ 0.62
VPS13AQ96RL7 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
VPS13AQ96RL7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 MOK-208ENST00000519058 917 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 AC233702.3-201ENST00000578656 1387 ntBASIC18.89■□□□□ 0.61
VPS13AQ96RL7 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.89■□□□□ 0.61
VPS13AQ96RL7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VPS13AQ96RL7 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms