Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AC092338.2-201ENST00000568827 1415 ntBASIC20.7■□□□□ 0.9
VPS52Q8N1B4 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 AL160286.2-201ENST00000567150 934 ntBASIC20.7■□□□□ 0.9
VPS52Q8N1B4 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
VPS52Q8N1B4 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 FAM8A6P-201ENST00000407496 1135 ntBASIC20.69■□□□□ 0.9
VPS52Q8N1B4 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 YBX1P2-201ENST00000489612 999 ntBASIC20.69■□□□□ 0.9
VPS52Q8N1B4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 AL023803.3-201ENST00000615559 522 ntBASIC20.69■□□□□ 0.9
VPS52Q8N1B4 AL358472.4-201ENST00000633140 710 ntBASIC20.69■□□□□ 0.9
VPS52Q8N1B4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 AFG3L1P-217ENST00000557444 2447 ntBASIC20.69■□□□□ 0.9
VPS52Q8N1B4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
VPS52Q8N1B4 AP001271.2-201ENST00000624018 1556 ntBASIC20.68■□□□□ 0.9
VPS52Q8N1B4 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 CD70-202ENST00000423145 881 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 COX11P1-201ENST00000489116 835 ntBASIC20.68■□□□□ 0.9
VPS52Q8N1B4 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 AC091076.1-201ENST00000610741 619 ntBASIC20.68■□□□□ 0.9
VPS52Q8N1B4 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
VPS52Q8N1B4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 TCF3P1-201ENST00000423021 1937 ntBASIC20.67■□□□□ 0.9
VPS52Q8N1B4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 TSPY5P-201ENST00000426936 936 ntBASIC20.67■□□□□ 0.9
VPS52Q8N1B4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 TSPY17P-201ENST00000450329 467 ntBASIC20.67■□□□□ 0.9
VPS52Q8N1B4 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 AC141257.4-201ENST00000634557 245 ntBASIC20.67■□□□□ 0.9
VPS52Q8N1B4 AC136944.6-201ENST00000634818 245 ntBASIC20.67■□□□□ 0.9
VPS52Q8N1B4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
VPS52Q8N1B4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS52Q8N1B4 LINC01465-201ENST00000408887 1940 ntBASIC20.66■□□□□ 0.9
VPS52Q8N1B4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS52Q8N1B4 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS52Q8N1B4 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
VPS52Q8N1B4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS52Q8N1B4 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
VPS52Q8N1B4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.66■□□□□ 0.9
VPS52Q8N1B4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms