Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD3Q3KNS1 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 AL161938.1-201ENST00000569833 2180 ntBASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 AL355355.2-201ENST00000442321 338 ntBASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 AP003071.4-201ENST00000562276 1284 ntBASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 AL160286.2-201ENST00000567150 934 ntBASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 AC073195.1-201ENST00000607241 877 ntBASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.68■□□□□ 0.58
PTCHD3Q3KNS1 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 AC211429.1-201ENST00000415277 523 ntBASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
PTCHD3Q3KNS1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 AL049812.1-201ENST00000432563 2267 ntBASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.66■□□□□ 0.58
PTCHD3Q3KNS1 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 63.5 ms