Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.7□□□□□ -0.22
COL7A1Q02388 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.7□□□□□ -0.22
COL7A1Q02388 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
COL7A1Q02388 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC13.69□□□□□ -0.22
COL7A1Q02388 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 BX842568.4-201ENST00000421222 227 ntBASIC13.69□□□□□ -0.22
COL7A1Q02388 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.69□□□□□ -0.22
COL7A1Q02388 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 AL121772.3-201ENST00000610840 674 ntBASIC13.69□□□□□ -0.22
COL7A1Q02388 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC13.69□□□□□ -0.22
COL7A1Q02388 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.69□□□□□ -0.22
COL7A1Q02388 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.69□□□□□ -0.22
COL7A1Q02388 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
COL7A1Q02388 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 AL391807.1-203ENST00000604392 2365 ntBASIC13.68□□□□□ -0.22
COL7A1Q02388 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC13.68□□□□□ -0.22
COL7A1Q02388 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 PMS2P2-201ENST00000425039 1128 ntBASIC13.68□□□□□ -0.22
COL7A1Q02388 RNPS1P1-201ENST00000507437 918 ntBASIC13.68□□□□□ -0.22
COL7A1Q02388 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
COL7A1Q02388 Z83836.1-201ENST00000624605 1642 ntBASIC13.68□□□□□ -0.22
COL7A1Q02388 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
COL7A1Q02388 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
COL7A1Q02388 AF238378.1-201ENST00000526806 358 ntBASIC13.68□□□□□ -0.22
COL7A1Q02388 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL7A1Q02388 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL7A1Q02388 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC13.68□□□□□ -0.22
COL7A1Q02388 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC13.68□□□□□ -0.22
COL7A1Q02388 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC13.68□□□□□ -0.22
COL7A1Q02388 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
COL7A1Q02388 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
COL7A1Q02388 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 TLE1-202ENST00000376484 666 ntTSL 3 BASIC13.67□□□□□ -0.22
COL7A1Q02388 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
COL7A1Q02388 MIR940-201ENST00000401276 94 ntBASIC13.67□□□□□ -0.22
COL7A1Q02388 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.67□□□□□ -0.22
COL7A1Q02388 AP001005.1-201ENST00000571755 1248 ntBASIC13.67□□□□□ -0.22
COL7A1Q02388 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
COL7A1Q02388 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC13.67□□□□□ -0.22
COL7A1Q02388 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC13.67□□□□□ -0.22
COL7A1Q02388 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC13.67□□□□□ -0.22
COL7A1Q02388 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC13.67□□□□□ -0.22
COL7A1Q02388 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
COL7A1Q02388 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
COL7A1Q02388 BID-212ENST00000614949 1988 ntTSL 5 BASIC13.67□□□□□ -0.22
COL7A1Q02388 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms