Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC30.35■■■□□ 2.45
CLIP1P30622 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CLIP1P30622 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CLIP1P30622 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC30.34■■■□□ 2.45
CLIP1P30622 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
CLIP1P30622 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC30.34■■■□□ 2.45
CLIP1P30622 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC30.34■■■□□ 2.45
CLIP1P30622 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
CLIP1P30622 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC30.34■■■□□ 2.45
CLIP1P30622 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CLIP1P30622 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CLIP1P30622 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC30.34■■■□□ 2.45
CLIP1P30622 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CLIP1P30622 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC30.33■■■□□ 2.45
CLIP1P30622 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CLIP1P30622 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC30.33■■■□□ 2.45
CLIP1P30622 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
CLIP1P30622 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CLIP1P30622 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
CLIP1P30622 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC30.33■■■□□ 2.45
CLIP1P30622 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC30.33■■■□□ 2.45
CLIP1P30622 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC30.33■■■□□ 2.45
CLIP1P30622 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
CLIP1P30622 CR769767.2-201ENST00000622735 460 ntBASIC30.33■■■□□ 2.45
CLIP1P30622 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
CLIP1P30622 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC30.33■■■□□ 2.45
CLIP1P30622 KRT8P3-201ENST00000519669 1449 ntBASIC30.33■■■□□ 2.45
CLIP1P30622 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC30.32■■■□□ 2.44
CLIP1P30622 ANKRD20A18P-201ENST00000359341 492 ntBASIC30.32■■■□□ 2.44
CLIP1P30622 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 PHB2-202ENST00000440277 996 ntTSL 5 BASIC30.32■■■□□ 2.44
CLIP1P30622 AC009947.2-201ENST00000444014 672 ntBASIC30.32■■■□□ 2.44
CLIP1P30622 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC30.32■■■□□ 2.44
CLIP1P30622 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC30.32■■■□□ 2.44
CLIP1P30622 AL023973.1-201ENST00000624619 620 ntBASIC30.32■■■□□ 2.44
CLIP1P30622 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
CLIP1P30622 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC30.32■■■□□ 2.44
CLIP1P30622 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
CLIP1P30622 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
CLIP1P30622 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC30.32■■■□□ 2.44
CLIP1P30622 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC30.32■■■□□ 2.44
CLIP1P30622 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
CLIP1P30622 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
CLIP1P30622 AC141586.3-201ENST00000562166 1838 ntBASIC30.32■■■□□ 2.44
CLIP1P30622 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 COPE-203ENST00000351079 907 ntTSL 2 BASIC30.31■■■□□ 2.44
CLIP1P30622 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 COX11P1-201ENST00000489116 835 ntBASIC30.31■■■□□ 2.44
CLIP1P30622 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC30.31■■■□□ 2.44
CLIP1P30622 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC30.31■■■□□ 2.44
CLIP1P30622 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC30.31■■■□□ 2.44
CLIP1P30622 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC30.31■■■□□ 2.44
CLIP1P30622 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC30.31■■■□□ 2.44
CLIP1P30622 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC30.31■■■□□ 2.44
CLIP1P30622 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLIP1P30622 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC30.31■■■□□ 2.44
CLIP1P30622 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC30.31■■■□□ 2.44
CLIP1P30622 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC30.3■■■□□ 2.44
CLIP1P30622 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC30.3■■■□□ 2.44
CLIP1P30622 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC30.3■■■□□ 2.44
CLIP1P30622 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC30.3■■■□□ 2.44
CLIP1P30622 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC30.3■■■□□ 2.44
CLIP1P30622 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 IRX1P1-201ENST00000438849 1838 ntBASIC30.3■■■□□ 2.44
CLIP1P30622 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
CLIP1P30622 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
CLIP1P30622 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
CLIP1P30622 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
CLIP1P30622 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 ISCU-203ENST00000431221 799 ntTSL 2 BASIC30.3■■■□□ 2.44
CLIP1P30622 AL441883.1-201ENST00000566170 1045 ntBASIC30.3■■■□□ 2.44
CLIP1P30622 AL512604.3-201ENST00000569583 964 ntBASIC30.3■■■□□ 2.44
CLIP1P30622 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC30.3■■■□□ 2.44
CLIP1P30622 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
CLIP1P30622 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms