Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.8■□□□□ 0.76
VCANP13611 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.8■□□□□ 0.76
VCANP13611 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
VCANP13611 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.8■□□□□ 0.76
VCANP13611 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.8■□□□□ 0.76
VCANP13611 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC19.8■□□□□ 0.76
VCANP13611 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.8■□□□□ 0.76
VCANP13611 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.8■□□□□ 0.76
VCANP13611 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 ZNF259P1-201ENST00000407656 1365 ntBASIC19.8■□□□□ 0.76
VCANP13611 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VCANP13611 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VCANP13611 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.8■□□□□ 0.76
VCANP13611 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.8■□□□□ 0.76
VCANP13611 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.8■□□□□ 0.76
VCANP13611 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.8■□□□□ 0.76
VCANP13611 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.8■□□□□ 0.76
VCANP13611 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC19.8■□□□□ 0.76
VCANP13611 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VCANP13611 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCANP13611 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCANP13611 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.79■□□□□ 0.76
VCANP13611 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.79■□□□□ 0.76
VCANP13611 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.79■□□□□ 0.76
VCANP13611 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.79■□□□□ 0.76
VCANP13611 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCANP13611 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VCANP13611 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC19.79■□□□□ 0.76
VCANP13611 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCANP13611 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCANP13611 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VCANP13611 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.79■□□□□ 0.76
VCANP13611 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.79■□□□□ 0.76
VCANP13611 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VCANP13611 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
VCANP13611 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.78■□□□□ 0.76
VCANP13611 AC074051.2-201ENST00000565115 352 ntBASIC19.78■□□□□ 0.76
VCANP13611 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC19.78■□□□□ 0.76
VCANP13611 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.78■□□□□ 0.76
VCANP13611 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.78■□□□□ 0.76
VCANP13611 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.78■□□□□ 0.76
VCANP13611 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.78■□□□□ 0.76
VCANP13611 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.78■□□□□ 0.76
VCANP13611 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
VCANP13611 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
VCANP13611 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
VCANP13611 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC19.78■□□□□ 0.76
VCANP13611 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.78■□□□□ 0.76
VCANP13611 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC19.78■□□□□ 0.76
VCANP13611 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
VCANP13611 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCANP13611 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.77■□□□□ 0.76
VCANP13611 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCANP13611 AL117328.2-201ENST00000624617 1940 ntBASIC19.77■□□□□ 0.76
VCANP13611 AL024507.2-201ENST00000606070 2574 ntBASIC19.77■□□□□ 0.76
VCANP13611 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC19.77■□□□□ 0.76
VCANP13611 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.77■□□□□ 0.76
VCANP13611 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
VCANP13611 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.77■□□□□ 0.75
VCANP13611 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.75
VCANP13611 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VCANP13611 AC099343.3-201ENST00000605834 2503 ntBASIC19.77■□□□□ 0.75
VCANP13611 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
VCANP13611 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.77■□□□□ 0.75
VCANP13611 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
VCANP13611 Z69720.1-201ENST00000601483 472 ntBASIC19.77■□□□□ 0.75
VCANP13611 AL596442.2-201ENST00000610240 980 ntBASIC19.77■□□□□ 0.75
VCANP13611 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.76■□□□□ 0.75
VCANP13611 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCANP13611 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
VCANP13611 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.76■□□□□ 0.75
VCANP13611 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC19.76■□□□□ 0.75
VCANP13611 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
VCANP13611 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.76■□□□□ 0.75
VCANP13611 HNRNPDP1-201ENST00000439535 754 ntBASIC19.76■□□□□ 0.75
VCANP13611 AC079602.3-201ENST00000623931 403 ntBASIC19.76■□□□□ 0.75
VCANP13611 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
VCANP13611 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
VCANP13611 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.76■□□□□ 0.75
VCANP13611 EMD-201ENST00000369835 966 ntTSL 3 BASIC19.76■□□□□ 0.75
VCANP13611 TUBB8P6-201ENST00000436895 1288 ntBASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms