Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.44■□□□□ 0.54
LDLRP01130 RCN1P1-201ENST00000400413 996 ntBASIC18.44■□□□□ 0.54
LDLRP01130 POM121L13P-201ENST00000422362 380 ntBASIC18.44■□□□□ 0.54
LDLRP01130 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.44■□□□□ 0.54
LDLRP01130 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
LDLRP01130 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.44■□□□□ 0.54
LDLRP01130 AC097493.4-201ENST00000641197 219 ntBASIC18.44■□□□□ 0.54
LDLRP01130 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
LDLRP01130 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
LDLRP01130 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
LDLRP01130 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
LDLRP01130 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.43■□□□□ 0.54
LDLRP01130 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 MCRIP2P1-201ENST00000394346 511 ntBASIC18.43■□□□□ 0.54
LDLRP01130 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.43■□□□□ 0.54
LDLRP01130 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 PGM5P4-201ENST00000421970 445 ntBASIC18.43■□□□□ 0.54
LDLRP01130 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.43■□□□□ 0.54
LDLRP01130 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 CDV3P1-201ENST00000471403 739 ntBASIC18.43■□□□□ 0.54
LDLRP01130 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
LDLRP01130 AL049637.2-201ENST00000641778 930 ntBASIC18.43■□□□□ 0.54
LDLRP01130 AC079598.2-202ENST00000546624 1451 ntBASIC18.43■□□□□ 0.54
LDLRP01130 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
LDLRP01130 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
LDLRP01130 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
LDLRP01130 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 PPOX-219ENST00000544598 813 ntTSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.42■□□□□ 0.54
LDLRP01130 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.42■□□□□ 0.54
LDLRP01130 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.42■□□□□ 0.54
LDLRP01130 AL445228.2-201ENST00000605589 952 ntBASIC18.42■□□□□ 0.54
LDLRP01130 AP001412.1-201ENST00000608405 714 ntBASIC18.42■□□□□ 0.54
LDLRP01130 AC012306.2-201ENST00000609350 630 ntBASIC18.42■□□□□ 0.54
LDLRP01130 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
LDLRP01130 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.42■□□□□ 0.54
LDLRP01130 AP001271.2-201ENST00000624018 1556 ntBASIC18.42■□□□□ 0.54
LDLRP01130 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.41■□□□□ 0.54
LDLRP01130 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.41■□□□□ 0.54
LDLRP01130 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
LDLRP01130 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
LDLRP01130 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms