Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF40O75150 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
RNF40O75150 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF40O75150 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF40O75150 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RNF40O75150 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.59■□□□□ 0.89
RNF40O75150 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF40O75150 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF40O75150 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RNF40O75150 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF40O75150 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF40O75150 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RNF40O75150 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.58■□□□□ 0.89
RNF40O75150 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
RNF40O75150 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
RNF40O75150 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF40O75150 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.58■□□□□ 0.89
RNF40O75150 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RNF40O75150 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
RNF40O75150 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.58■□□□□ 0.89
RNF40O75150 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.58■□□□□ 0.89
RNF40O75150 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
RNF40O75150 AL355075.4-201ENST00000554988 638 ntBASIC20.58■□□□□ 0.89
RNF40O75150 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.58■□□□□ 0.89
RNF40O75150 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.58■□□□□ 0.89
RNF40O75150 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.58■□□□□ 0.89
RNF40O75150 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.58■□□□□ 0.89
RNF40O75150 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RNF40O75150 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
RNF40O75150 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.58■□□□□ 0.88
RNF40O75150 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF40O75150 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
RNF40O75150 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF40O75150 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF40O75150 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF40O75150 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.58■□□□□ 0.88
RNF40O75150 AC018470.1-201ENST00000624790 3129 ntBASIC20.58■□□□□ 0.88
RNF40O75150 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF40O75150 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RNF40O75150 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.57■□□□□ 0.88
RNF40O75150 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RNF40O75150 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.57■□□□□ 0.88
RNF40O75150 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.57■□□□□ 0.88
RNF40O75150 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.57■□□□□ 0.88
RNF40O75150 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RNF40O75150 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
RNF40O75150 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.57■□□□□ 0.88
RNF40O75150 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
RNF40O75150 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RNF40O75150 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF40O75150 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.56■□□□□ 0.88
RNF40O75150 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.56■□□□□ 0.88
RNF40O75150 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF40O75150 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
RNF40O75150 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF40O75150 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.56■□□□□ 0.88
RNF40O75150 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.56■□□□□ 0.88
RNF40O75150 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RNF40O75150 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.56■□□□□ 0.88
RNF40O75150 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.56■□□□□ 0.88
RNF40O75150 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.56■□□□□ 0.88
RNF40O75150 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.56■□□□□ 0.88
RNF40O75150 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RNF40O75150 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF40O75150 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
RNF40O75150 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.56■□□□□ 0.88
RNF40O75150 AC138932.1-201ENST00000534164 6830 ntBASIC20.56■□□□□ 0.88
RNF40O75150 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RNF40O75150 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RNF40O75150 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
RNF40O75150 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
RNF40O75150 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 AC104581.1-202ENST00000635932 2618 ntBASIC20.55■□□□□ 0.88
RNF40O75150 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RNF40O75150 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.55■□□□□ 0.88
RNF40O75150 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.55■□□□□ 0.88
RNF40O75150 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms