Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH4O15457 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH4O15457 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH4O15457 ECEL1P2-202ENST00000465689 757 ntBASIC21.49■■□□□ 1.03
MSH4O15457 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH4O15457 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
MSH4O15457 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH4O15457 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH4O15457 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH4O15457 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH4O15457 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.49■■□□□ 1.03
MSH4O15457 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.49■■□□□ 1.03
MSH4O15457 KRT18P22-201ENST00000402024 1347 ntBASIC21.49■■□□□ 1.03
MSH4O15457 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
MSH4O15457 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
MSH4O15457 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH4O15457 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
MSH4O15457 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH4O15457 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.48■■□□□ 1.03
MSH4O15457 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH4O15457 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH4O15457 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
MSH4O15457 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH4O15457 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH4O15457 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
MSH4O15457 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH4O15457 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
MSH4O15457 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.48■■□□□ 1.03
MSH4O15457 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
MSH4O15457 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.48■■□□□ 1.03
MSH4O15457 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
MSH4O15457 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH4O15457 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH4O15457 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH4O15457 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH4O15457 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
MSH4O15457 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
MSH4O15457 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 AC007663.1-201ENST00000438948 1240 ntBASIC21.47■■□□□ 1.03
MSH4O15457 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC21.47■■□□□ 1.03
MSH4O15457 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH4O15457 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH4O15457 FAM87A-204ENST00000613235 858 ntBASIC21.47■■□□□ 1.03
MSH4O15457 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
MSH4O15457 AC116562.4-202ENST00000641738 218 ntBASIC21.47■■□□□ 1.03
MSH4O15457 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.47■■□□□ 1.03
MSH4O15457 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.47■■□□□ 1.03
MSH4O15457 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
MSH4O15457 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
MSH4O15457 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.47■■□□□ 1.03
MSH4O15457 FEM1AP3-201ENST00000403722 1741 ntBASIC21.46■■□□□ 1.03
MSH4O15457 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH4O15457 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH4O15457 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
MSH4O15457 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH4O15457 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.46■■□□□ 1.03
MSH4O15457 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
MSH4O15457 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH4O15457 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.46■■□□□ 1.03
MSH4O15457 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH4O15457 CCR12P-201ENST00000446203 998 ntBASIC21.46■■□□□ 1.03
MSH4O15457 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH4O15457 AL353719.1-201ENST00000566847 864 ntBASIC21.46■■□□□ 1.03
MSH4O15457 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
MSH4O15457 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
MSH4O15457 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.46■■□□□ 1.03
MSH4O15457 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
MSH4O15457 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.45■■□□□ 1.03
MSH4O15457 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
MSH4O15457 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
MSH4O15457 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.45■■□□□ 1.02
MSH4O15457 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.45■■□□□ 1.02
MSH4O15457 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.45■■□□□ 1.02
MSH4O15457 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC21.45■■□□□ 1.02
MSH4O15457 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
MSH4O15457 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms