Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC33.18■■■□□ 2.9
CCDC88BA6NC98 TBCB-205ENST00000585746 875 ntTSL 3 BASIC33.18■■■□□ 2.9
CCDC88BA6NC98 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC33.18■■■□□ 2.9
CCDC88BA6NC98 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC33.18■■■□□ 2.9
CCDC88BA6NC98 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC33.18■■■□□ 2.9
CCDC88BA6NC98 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 MCCD1P1-208ENST00000445732 328 ntBASIC33.17■■■□□ 2.9
CCDC88BA6NC98 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 KRT8P26-201ENST00000534154 1276 ntBASIC33.17■■■□□ 2.9
CCDC88BA6NC98 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 IFNL4P1-201ENST00000607083 540 ntBASIC33.17■■■□□ 2.9
CCDC88BA6NC98 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC33.17■■■□□ 2.9
CCDC88BA6NC98 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 CHCHD2P8-201ENST00000429873 447 ntBASIC33.16■■■□□ 2.9
CCDC88BA6NC98 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 KRT8P3-201ENST00000519669 1449 ntBASIC33.16■■■□□ 2.9
CCDC88BA6NC98 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC33.16■■■□□ 2.9
CCDC88BA6NC98 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 RNF126P1-202ENST00000569893 925 ntBASIC33.15■■■□□ 2.9
CCDC88BA6NC98 MIR3917-201ENST00000580971 93 ntBASIC33.15■■■□□ 2.9
CCDC88BA6NC98 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 AC092667.1-201ENST00000434301 2586 ntBASIC33.15■■■□□ 2.9
CCDC88BA6NC98 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 KRT8P10-201ENST00000450021 1447 ntBASIC33.15■■■□□ 2.9
CCDC88BA6NC98 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC33.15■■■□□ 2.9
CCDC88BA6NC98 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 MIR662-201ENST00000384847 95 ntBASIC33.14■■■□□ 2.9
CCDC88BA6NC98 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 AL136038.4-201ENST00000603606 1261 ntBASIC33.14■■■□□ 2.9
CCDC88BA6NC98 SPEG-225ENST00000617028 815 ntTSL 5 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 USP39-204ENST00000409766 2033 ntTSL 2 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC33.14■■■□□ 2.9
CCDC88BA6NC98 AL391807.1-203ENST00000604392 2365 ntBASIC33.14■■■□□ 2.9
CCDC88BA6NC98 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 AL845331.1-201ENST00000424978 1190 ntBASIC33.13■■■□□ 2.89
CCDC88BA6NC98 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 KLK8-205ENST00000593490 267 ntTSL 3 BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC33.13■■■□□ 2.89
CCDC88BA6NC98 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 AL732292.2-201ENST00000609649 430 ntBASIC33.12■■■□□ 2.89
CCDC88BA6NC98 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC33.12■■■□□ 2.89
CCDC88BA6NC98 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms